Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17b04
         (645 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0672 - 10325935-10326150,10326308-10326400,10326568-103267...    52   3e-07
01_06_1209 + 35427160-35427318,35427436-35427501,35427737-354278...    46   2e-05
03_02_0673 - 10328994-10329281                                         36   0.036
10_06_0112 + 10899079-10900656,10900761-10900920,10900948-109010...    33   0.15 
10_06_0110 + 10889414-10889669,10889756-10889806,10890595-108911...    33   0.15 
03_05_0795 + 27783813-27785246,27785339-27785591,27786377-27786639     28   5.5  
03_05_1161 - 30831043-30831151,30831641-30831759,30831880-308319...    28   7.3  

>03_02_0672 -
           10325935-10326150,10326308-10326400,10326568-10326708,
           10326828-10326893,10327099-10327359
          Length = 258

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
 Frame = +3

Query: 405 KVQLSVFYESACSDSKHFILEQLHPTIHK-LEDYIDLQLIPFGKASSINNGGDGFECQHG 581
           KV ++++YES C  S  F++  L       L D +DL L+P+G A  + +G    + +HG
Sbjct: 31  KVDVALYYESLCPYSAMFVVGSLAKVFRDGLLDAVDLSLVPYGNAR-VKDGKISCQVEHG 89

Query: 582 PPECFGNLIQDCTLN 626
             ECF N ++ C ++
Sbjct: 90  SEECFLNTVEACAID 104


>01_06_1209 +
           35427160-35427318,35427436-35427501,35427737-35427877,
           35428342-35428434,35428530-35428646,35428890-35429054
          Length = 246

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = +3

Query: 414 LSVFYESACSDSKHFILEQLHPTIHK-LEDYIDLQLIPFGKASSINNGGDGFECQHGPPE 590
           +SV+YE+ C     F++  L       L   +DL+L+PFG      +G     CQHG  E
Sbjct: 1   MSVYYETLCPFCSGFVVNDLARIFRDGLSPVVDLRLVPFGNGRVSPDGS--ITCQHGEEE 58

Query: 591 CFGNLIQDCTL 623
           C  N I+ C +
Sbjct: 59  CQLNAIEACVI 69


>03_02_0673 - 10328994-10329281
          Length = 95

 Score = 35.5 bits (78), Expect = 0.036
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +3

Query: 405 KVQLSVFYESACSDSKHFILEQLHPTIHK-LEDYIDLQLIPFGKASSINNGGDGFECQ 575
           KV L+++YE+ C     FI+  L       + D +DL+L+P+G A  +    +   CQ
Sbjct: 38  KVPLALYYETLCPYCSRFIVNHLAGIFEDGIVDAVDLRLVPYGNAHVV-GANNTISCQ 94


>10_06_0112 +
           10899079-10900656,10900761-10900920,10900948-10901028,
           10901264-10901517
          Length = 690

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 280 FVHVLACLVQHCLRAMYSRTATMQSHCY 197
           ++  LA L QH LR  Y R+  M  HCY
Sbjct: 278 YLEALALLPQHLLRGRYHRSVVMAGHCY 305


>10_06_0110 +
           10889414-10889669,10889756-10889806,10890595-10891163,
           10891178-10891660,10891747-10891944,10893300-10893354,
           10893372-10893631
          Length = 623

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 280 FVHVLACLVQHCLRAMYSRTATMQSHCY 197
           ++  LA L QH LR  Y R+  M  HCY
Sbjct: 343 YLEALALLPQHLLRGRYHRSVVMAGHCY 370


>03_05_0795 + 27783813-27785246,27785339-27785591,27786377-27786639
          Length = 649

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 283 LFVHVLACLVQHCLRAMYSRTATMQSHCY 197
           L++ V+ACL    LR  Y R      HCY
Sbjct: 244 LYLDVIACLPMDGLRMRYHRGLLKAGHCY 272


>03_05_1161 -
           30831043-30831151,30831641-30831759,30831880-30831906,
           30832117-30832158,30832293-30832392,30832481-30832545,
           30832619-30832694,30832878-30832939,30833248-30833253,
           30834704-30834782,30834890-30834957
          Length = 250

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +1

Query: 418 RFFMKALALTANTLYWSNYIRLYINLKTISTCSSYLLG 531
           +FF+    ++AN  +   Y +L   ++TI  C  +L+G
Sbjct: 86  QFFLAIFQISANGNWCHEYRKLKAKVETIQKCQKHLMG 123


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,881,352
Number of Sequences: 37544
Number of extensions: 334186
Number of successful extensions: 726
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)