Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17b02
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       59   4e-11
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.12 
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    26   0.28 
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   4.5  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 58.8 bits (136), Expect = 4e-11
 Identities = 44/146 (30%), Positives = 77/146 (52%), Gaps = 10/146 (6%)
 Frame = +2

Query: 191 PDTPNAADTSLLMKIIRQGLVESKLD-IEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYA 367
           P+ PN  + SL    +  G+   K D I++     N P   +++FEA  L+  +L  +  
Sbjct: 156 PELPND-EKSLFENGVEIGINFDKYDNIQVNVSGDNVP-QPIESFEAAGLRNIVLDNIKK 213

Query: 368 MGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSR---------VDSNK 520
            G+  P+ +Q+ ALP ++    ++++A +Q+G+GKTAAF + +++          V S  
Sbjct: 214 SGYKKPTPVQKHALPIIMNG--RDLMACAQTGSGKTAAFAVPIINTLLERSVDLVVTSTY 271

Query: 521 NYPQVLCLSPTYELAIQTGEVAAKMA 598
             PQV+ +SPT EL IQ  +   K +
Sbjct: 272 CEPQVVIVSPTRELTIQIWQQIVKFS 297


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 21/59 (35%), Positives = 30/59 (50%)
 Frame = +2

Query: 176 DSDDVPDTPNAADTSLLMKIIRQGLVESKLDIEIQRKDPNSPLYSVKTFEALHLKPNLL 352
           DSDD  D  N  D S     IR  +++   + EI R   NSPL  ++  + LHL+ N +
Sbjct: 195 DSDDGSDG-NDGDESSCRADIR--ILDLSRN-EITRLQENSPLLDLRQLQELHLQRNAI 249


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +3

Query: 57  NKDSSKS*IWLASGDKRQKSWRFQIKLQGWAWIKNIIKKQILMMYL 194
           N+D + S   L S DK+Q +WR    L GW+    I    I+M+ +
Sbjct: 373 NEDDNTS---LVSLDKKQYTWRHTSVLIGWSAFLCISLVYIIMLII 415


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
 Frame = +2

Query: 113 ELEISNKVAGLGLDKKHNQ-ETDSDDVPDTPNAADTSLLMKIIRQGLVESKLDIEIQRKD 289
           E+EIS      G DK++++ E  +D+V    N           R+   +S L     R  
Sbjct: 299 EIEISQNSVSTGSDKENHKTEEPNDEVATYDNTPRDFPYYMYSREQYSQSHLISNENRDF 358

Query: 290 PNSPLYSVK 316
             +P  SV+
Sbjct: 359 QTTPTVSVE 367


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,207
Number of Sequences: 438
Number of extensions: 3326
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)