Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17a21
(714 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|... 27 2.7
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 27 3.5
SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom... 27 3.5
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc... 26 4.7
SPBC1709.19c |||NifU-like protein|Schizosaccharomyces pombe|chr ... 26 4.7
SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosacc... 26 4.7
SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces p... 25 8.1
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 25 8.1
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo... 25 8.1
>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
3|||Manual
Length = 542
Score = 27.1 bits (57), Expect = 2.7
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -1
Query: 105 HNCRRFFQSKIEAGFENFLKFFFGELRDELQLLQP 1
H C+ S+I N ++ FFGE DE++ L+P
Sbjct: 478 HECQNSSNSEIYQKAYNIIEKFFGE-EDEIEELEP 511
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 26.6 bits (56), Expect = 3.5
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3
Query: 400 NKNDINTMSYLCTKSKVFNEVREFRGVL 317
NK D ++M LC +KV VR+ GVL
Sbjct: 1026 NKEDASSMKGLCCFAKVERIVRQTNGVL 1053
>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 459
Score = 26.6 bits (56), Expect = 3.5
Identities = 17/77 (22%), Positives = 35/77 (45%)
Frame = +3
Query: 399 LQIYYSFNPLTNTTNLFLPIFIYSVTKIIWFPPKDNSNTTNAMLFINSVMSNRLKNVIYI 578
L ++Y+F P T + + S ++ P++N N +NS+M N + +V
Sbjct: 277 LLVFYTFIPPRFTIQTSVTLINASFATLVSLYPEENEN-------LNSIMLNGINSVFQF 329
Query: 579 AQSLAVVVRDIFVYLFV 629
A ++++ F + V
Sbjct: 330 AFDYPLILQAAFSQIMV 346
>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 767
Score = 26.2 bits (55), Expect = 4.7
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +3
Query: 147 IEIPATAAHQDESGVRIN-DSIVSDHTSQEPLTIFGPETAAGDGEPVDDPSPFPSRAQRT 323
+++P++AA SG R SI +D S + ++ ++ G P D +P S A
Sbjct: 138 LQVPSSAA----SGARTQRTSITNDPQSSQSSSVSRNPASSRAGSPTRDNAPAASPASSE 193
Query: 324 PR 329
PR
Sbjct: 194 PR 195
>SPBC1709.19c |||NifU-like protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 260
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +3
Query: 414 SFNPLTNTTNLFLPIFIYSVTKIIWFPPKDNSNTTNAMLFI 536
+F P+++ N+F P F + IW ++ N NA+ F+
Sbjct: 20 TFLPVSSAGNVFTPRFQLQAIRSIWIRSEETPN-ENALKFL 59
>SPBC17D11.08 |||WD repeat protein, human WDR68
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 435
Score = 26.2 bits (55), Expect = 4.7
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 465 YSVTKIIWFPPKDNSNTTNAML 530
Y VTK++W P SNT + +L
Sbjct: 108 YPVTKLLWNPSSVGSNTDSQLL 129
>SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 25.4 bits (53), Expect = 8.1
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 138 SQDIEIPATAAHQDESGVRINDSIVSDHTSQEPLTIFGPE 257
S++ PA A ++ N+SI+S TSQ P T G E
Sbjct: 85 SKETSAPAAAVEIEKE----NESIISKETSQAPETSTGAE 120
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 25.4 bits (53), Expect = 8.1
Identities = 25/89 (28%), Positives = 35/89 (39%)
Frame = +3
Query: 60 QSRLQFLTGKSADSCARGSPVRTVDSSQDIEIPATAAHQDESGVRINDSIVSDHTSQEPL 239
QS +Q L G SA S G P ++++ S+ A H + VS TS P
Sbjct: 368 QSLMQELGGGSAISNGNGEPQKSIEFSESGAASPQAGHPPPWAAA--STSVSSSTS-SPA 424
Query: 240 TIFGPETAAGDGEPVDDPSPFPSRAQRTP 326
P ++A P P P+ Q P
Sbjct: 425 PWAKPASSAAPSNPA--PWQQPAAPQSAP 451
>SPBC27.02c |ask1|mug181|DASH complex subunit
Ask1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 25.4 bits (53), Expect = 8.1
Identities = 14/52 (26%), Positives = 20/52 (38%)
Frame = +3
Query: 222 TSQEPLTIFGPETAAGDGEPVDDPSPFPSRAQRTPRNSRTSLKTLLLVHKYD 377
T +EP + E D P PSP + N R S L L +++
Sbjct: 193 TPREPKNLQSQEVMDIDSSPFVSPSPISMKMDMPSLNDRNSSHALSLFAEFE 244
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,784,084
Number of Sequences: 5004
Number of extensions: 58653
Number of successful extensions: 193
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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