Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17a21
         (714 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    31   0.62 
AF016669-3|AAB66097.1|  275|Caenorhabditis elegans Hypothetical ...    31   1.1  
AF016450-10|AAB65990.1|  166|Caenorhabditis elegans Hypothetical...    30   1.4  
U80029-13|AAB37592.2|  429|Caenorhabditis elegans Hypothetical p...    30   1.9  
Z71264-2|CAA95830.1| 1202|Caenorhabditis elegans Hypothetical pr...    28   5.8  
U39472-6|AAK31392.1|  218|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
            K06A9.1b protein.
          Length = 2232

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 29/104 (27%), Positives = 42/104 (40%), Gaps = 5/104 (4%)
 Frame = +3

Query: 48   LENSQSRLQFLTGKSADSCARGSPVRTVDSS-----QDIEIPATAAHQDESGVRINDSIV 212
            +  S S    +T  S+++   GS  +T  SS         IP+T      SG  I+D   
Sbjct: 1316 VSGSNSSGSTVTIGSSEASTSGSSFKTSPSSISPVPTSSPIPSTTFASSTSGSTISDVSS 1375

Query: 213  SDHTSQEPLTIFGPETAAGDGEPVDDPSPFPSRAQRTPRNSRTS 344
               TS  PL+   P T     +     S   S+A  +P  S+TS
Sbjct: 1376 VSTTSLAPLSSSLPSTVPSSTQSFSSTSEGSSKASSSPVPSQTS 1419


>AF016669-3|AAB66097.1|  275|Caenorhabditis elegans Hypothetical
           protein K10G6.2 protein.
          Length = 275

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +2

Query: 500 RQFKHYKCNVIHK*CDVQQT*KCYLHCPKPSCSCKGHFCLSICDCLHTIWFMS 658
           RQ K ++   + K   +Q    CY HC +         C++ C+CLH  W M+
Sbjct: 105 RQTKFWEGAGVPK-ATIQAMSSCYSHCKETD-----PVCVNACECLHLQWMMN 151


>AF016450-10|AAB65990.1|  166|Caenorhabditis elegans Hypothetical
           protein B0238.12 protein.
          Length = 166

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = -3

Query: 406 ICNKNDINTMSYLCTKSKVFNEVRE--FRGVLCARDGKGEGSSTGSPS 269
           +C K  IN +   C    V NE+     R   C+R G G GSST  PS
Sbjct: 61  MCTKQCINNVCQ-CRSGYVRNEITRQCVRQAQCSRPGTGFGSSTPFPS 107


>U80029-13|AAB37592.2|  429|Caenorhabditis elegans Hypothetical
           protein T20D4.5 protein.
          Length = 429

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 21/69 (30%), Positives = 29/69 (42%)
 Frame = +3

Query: 348 KTLLLVHKYDMVLMSFLLQIYYSFNPLTNTTNLFLPIFIYSVTKIIWFPPKDNSNTTNAM 527
           KTL L H  D V M+ ++     F       +  +   I    K + FP   +SNTT + 
Sbjct: 194 KTLALDHNIDYVTMNIIIHKPIKFLKTNAKESSGVTFSIEVYWKTVNFPTPVSSNTTTSE 253

Query: 528 LFINSVMSN 554
            F  S  SN
Sbjct: 254 KFSTSSRSN 262


>Z71264-2|CAA95830.1| 1202|Caenorhabditis elegans Hypothetical
           protein K07G5.3 protein.
          Length = 1202

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 261 AAGDGEPVDDPSPFPSRAQRTPRNSRTSLKTLLLVHK 371
           A GDGE    P PF    +   +N R S+K  L+  K
Sbjct: 41  APGDGEQSPSPGPFTKDEKDKKQNRRESIKEHLMKFK 77


>U39472-6|AAK31392.1|  218|Caenorhabditis elegans Hypothetical
           protein B0304.2 protein.
          Length = 218

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
 Frame = +3

Query: 54  NSQSRLQFLTGKSADSCARGSPVRTVDSSQDIEI-PATAAHQDESG-----VRINDSIVS 215
           ++ S L   T +S DS   G P     +S DIEI P   A +  SG     VR   S  +
Sbjct: 71  SNDSNLVRNTARSPDSSMNGRPQTRRSTSSDIEISPRVRAMRSTSGSSMDLVRTVSSFCT 130

Query: 216 DHTSQEPLTIFGPET 260
           D  S +  T  G  T
Sbjct: 131 DSISPKFFTNHGSTT 145


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,462,124
Number of Sequences: 27780
Number of extensions: 335382
Number of successful extensions: 1207
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1207
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)