Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17a19
         (356 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S...    25   4.6  
SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   6.1  
SPAC3A12.07 |rpb11||DNA-directed RNA polymerase II complex subun...    24   8.0  
SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces pomb...    24   8.0  
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ...    24   8.0  
SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomy...    24   8.0  

>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
           Klp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -3

Query: 189 CKDLQDSTVVLVARCSGKGAEMQVHRSDDNPEVNRLVDNN 70
           CK  Q+S   +V+   G+GA+M      D+ ++ + +  N
Sbjct: 531 CKTFQNSISHIVSSFKGEGADMYADMLQDDVDLLKSIIEN 570


>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 179 KSLHQHIQLLHSNYVTQW 232
           +S H +I  L+SNY T W
Sbjct: 166 QSAHPYISSLNSNYPTTW 183


>SPAC3A12.07 |rpb11||DNA-directed RNA polymerase II complex subunit
           Rpb11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 123

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 7/30 (23%), Positives = 20/30 (66%)
 Frame = +2

Query: 173 SCKSLHQHIQLLHSNYVTQWTISIVNLKMV 262
           + KSL  H++ +  N++ +W + +++++ V
Sbjct: 89  AAKSLITHLEEIKVNFMREWELKMISVEGV 118


>SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 264 ETHTCFVKCTVNLSLIIY*SFNDIIMIIKKK 356
           +THTC++  +VN  L    SF  I++  +KK
Sbjct: 10  KTHTCYMNTSVNEHLDQDESFLRILIDTRKK 40


>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 565

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +2

Query: 206 LHSNYVTQWTISIVNLKMVRNTHLFCKMYSKLVANN 313
           L+ NY++ WT+       ++NTH   + Y   V  N
Sbjct: 367 LNRNYLSAWTLMGHEYVELKNTHAAIESYRLAVDVN 402


>SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 215

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +1

Query: 73  IVHQS-VHLRIVVRSVDLHLRSFARAACHQHNGAIL*ILASTYTAVTLK 216
           I+H S VH+  +  S D+  + ++ +A H H   +    AST      K
Sbjct: 63  IIHDSAVHIAPLPSSCDIDFKDYSTSAFHLHFSPLTPNHASTEAVSNFK 111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,407,187
Number of Sequences: 5004
Number of extensions: 27407
Number of successful extensions: 78
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)