Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17a18
         (603 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory...    29   0.52 
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    27   1.6  
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch...    27   1.6  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    26   3.7  
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha...    26   3.7  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   4.9  
SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces...    25   6.4  
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo...    25   6.4  
SPAC17G8.11c |||mannosyltransferase complex subunit |Schizosacch...    25   8.5  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    25   8.5  
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    25   8.5  
SPAC4D7.11 |||conserved fungal protein|Schizosaccharomyces pombe...    25   8.5  

>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
           factor |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 17/46 (36%), Positives = 19/46 (41%)
 Frame = +3

Query: 438 PVATSTTGPLQIPQQASTPIVRPEQTCQTSETVVQGRDKICKGTLI 575
           PV  S T P   P  +STP+       QT  T V    K  K  LI
Sbjct: 580 PVTASETSPPHAPAVSSTPVTSAPPVSQTKVTKVSVPKKTSKKFLI 625


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 429 ANPPVATSTTGPLQIPQQASTPIVRPEQTCQT 524
           A+  ++ ++T P ++   AST IVRP    QT
Sbjct: 257 ASGSISKNSTSPSKVKVNASTKIVRPVSAAQT 288


>SPBC25H2.15 |||programmed cell death protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 430 ATSTGFPFSLTNSVTVHSPLSCLYPRPSLITYVQK 326
           ATS   PFSL+  V    P S ++ +PS     Q+
Sbjct: 152 ATSANNPFSLSTDVNPSKPSSNVFSKPSFAAKAQQ 186


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 426 VANPPVATSTTGPLQIPQQASTP 494
           +   P + STT P  +PQ +STP
Sbjct: 397 ILKKPSSLSTTDPTLVPQSSSTP 419


>SPAPJ696.01c |vps17||retromer complex subunit
           Vps17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 549

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 432 NPPVATSTTGPLQIPQQASTPIVR 503
           NP  A+STTG   I Q  S P +R
Sbjct: 77  NPSAASSTTGENSISQTGSGPFLR 100


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 15/52 (28%), Positives = 21/52 (40%)
 Frame = +3

Query: 384 TVTEFVNENGNPVDVANPPVATSTTGPLQIPQQASTPIVRPEQTCQTSETVV 539
           T T   + N +P+   +    TST+ P       STPI        TS T +
Sbjct: 210 TSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSI 261


>SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 350

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 137 YSFKFSWRDDVLGGSGLRRTY 75
           + F     DD  GGSGL+R Y
Sbjct: 25  FGFNSKLLDDAFGGSGLKRGY 45


>SPBC27.02c |ask1|mug181|DASH complex subunit
           Ask1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/52 (23%), Positives = 22/52 (42%)
 Frame = +3

Query: 393 EFVNENGNPVDVANPPVATSTTGPLQIPQQASTPIVRPEQTCQTSETVVQGR 548
           +FV      +DV+   ++        IP +  TP+ +PE    T  + +  R
Sbjct: 131 DFVQSTPKKMDVSLEDISLDDAALTPIPARMQTPLRKPENNPHTGRSALLHR 182


>SPAC17G8.11c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 184 SSPFTASSTKRWKAWNR 234
           SSPF+ +S  RWK ++R
Sbjct: 307 SSPFSKTSPSRWKIFHR 323


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -2

Query: 212 FVELAVKGEERETIVWHCYS*SSWIYSFKFSWRDDVLG 99
           FVE   K E +E +    +  S +  +F F   DD+LG
Sbjct: 28  FVEQLSKFEGKEGLKRKLFDSSEYFQNFSFQVNDDLLG 65


>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +3

Query: 183 LFAFHGKLNEEMEGLESGHWSRDITKAKN 269
           ++ FHG  ++E++ L  G W   + K+ +
Sbjct: 426 VWVFHGCRDQELDELYHGEWENPLQKSSD 454


>SPAC4D7.11 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 281

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +3

Query: 390 TEFVNENGNPVDVANPPVATSTTG 461
           +++  EN N   + N P++++TTG
Sbjct: 248 SQYATENANTNSINNSPLSSNTTG 271


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,617,169
Number of Sequences: 5004
Number of extensions: 55518
Number of successful extensions: 184
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)