Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17a18
(603 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0508 + 4027113-4028522 35 0.057
01_01_0771 - 5982826-5983327,5983424-5984772 30 1.6
02_01_0752 - 5583757-5584092 29 2.8
01_01_0469 - 3456067-3456123,3456414-3456565,3456649-3456779,345... 29 3.7
12_02_0737 + 22662657-22662733,22662843-22662930,22663873-226639... 28 5.0
12_01_0368 + 2815424-2815658,2816898-2817120,2818329-2818680,281... 28 5.0
11_01_0345 + 2579602-2579836,2581262-2581484,2582822-2583173,258... 28 5.0
03_05_0456 - 24498212-24499581,24502660-24503071 28 5.0
09_02_0393 + 8510089-8510274,8510450-8510806,8510889-8511011,851... 28 6.5
07_03_1091 + 23899825-23900649,23900750-23900998,23901104-239011... 28 6.5
04_04_1059 + 30467324-30467452,30469008-30469082,30469439-304694... 28 6.5
01_05_0595 - 23509472-23509872,23509991-23510045 28 6.5
07_03_0395 + 17644813-17644921,17644961-17645084,17645545-176462... 27 8.7
02_05_0092 + 25749070-25750638 27 8.7
02_02_0705 - 13124955-13125212,13125309-13125389,13125539-13125862 27 8.7
01_06_0838 + 32331588-32332346 27 8.7
01_06_0366 - 28779899-28780543,28780813-28781076,28781165-287814... 27 8.7
>12_01_0508 + 4027113-4028522
Length = 469
Score = 34.7 bits (76), Expect = 0.057
Identities = 19/37 (51%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -3
Query: 460 PVVDVATGGLA---TSTGFPFSLTNSVTVHSPLSCLY 359
PV ATGG A TSTGFPFS++ ++ V LS +Y
Sbjct: 60 PVEGAATGGRASHRTSTGFPFSVSLNLAVPPALSSIY 96
>01_01_0771 - 5982826-5983327,5983424-5984772
Length = 616
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -2
Query: 395 FCYSPFAVILPISEAILDYIRPEINLISQF 306
FCY+ FAV +P++ Y+R E+ ++ F
Sbjct: 132 FCYTEFAVEIPVAGGSFAYLRVELGDVAAF 161
>02_01_0752 - 5583757-5584092
Length = 111
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = -3
Query: 589 NSSLKIKVPLQILSRPWTTVSDVWHVCSGLTIGVLACWGICSGP 458
+S+ + V + L+ W V VWH C G++ C G+ P
Sbjct: 69 SSAAVVTVQMPTLAS-WPPVVAVWHSCDNYVCGLVGCVGVDREP 111
>01_01_0469 -
3456067-3456123,3456414-3456565,3456649-3456779,
3456846-3458036,3458460-3458541,3458947-3458984,
3459091-3459250,3459356-3459557,3460245-3460329,
3460809-3460863,3461230-3461325,3461807-3461940,
3462031-3462043,3462315-3462419,3462935-3463121
Length = 895
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = +3
Query: 171 DGFSLF---AFHGKLNEEMEGLESGHWSRDITKAKNGVWTFRDRNAQLKLGDKIYFW 332
DG SLF H K ++ LE+G+WS T+ + R+ + +L L +K W
Sbjct: 440 DGVSLFDNLEEHHKRTDDQNNLEAGYWSDKATEKQR----TREPSCRLSLKEKFSNW 492
>12_02_0737 +
22662657-22662733,22662843-22662930,22663873-22663925,
22664067-22664542,22664645-22664805,22664889-22665086,
22665324-22665531,22665632-22665756,22665897-22666080,
22666184-22666344
Length = 576
Score = 28.3 bits (60), Expect = 5.0
Identities = 22/86 (25%), Positives = 36/86 (41%)
Frame = +3
Query: 339 VIKDGLGYRQDNGEWTVTEFVNENGNPVDVANPPVATSTTGPLQIPQQASTPIVRPEQTC 518
V+ DG + D G WT EF N P D V T TG L++ + +
Sbjct: 135 VVLDGDFNKNDQGCWTSEEFRNHIVRPRD----KVGTVLTGELELSLKNGEAYIHDATFV 190
Query: 519 QTSETVVQGRDKICKGTLIFSDEFEK 596
S+ + G+ ++ G ++ D E+
Sbjct: 191 DNSKFMRSGKFRL--GVMVIDDLGER 214
>12_01_0368 +
2815424-2815658,2816898-2817120,2818329-2818680,
2819354-2819620
Length = 358
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -2
Query: 404 IDEFCYSPFAVILPISEAILDYIRPEINLISQF 306
+ FCY+ FAV +P++ Y+R ++ F
Sbjct: 52 LSAFCYTEFAVDMPVAGGAFSYLRVTFGELAAF 84
>11_01_0345 +
2579602-2579836,2581262-2581484,2582822-2583173,
2583894-2584125,2584683-2585266
Length = 541
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -2
Query: 404 IDEFCYSPFAVILPISEAILDYIRPEINLISQF 306
+ FCY+ FAV +P++ Y+R ++ F
Sbjct: 52 LSAFCYTEFAVDMPVAGGAFSYLRVTFGELAAF 84
>03_05_0456 - 24498212-24499581,24502660-24503071
Length = 593
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -2
Query: 416 IPIFIDEFCYSPFAVILPISEAILDYIRPEI 324
+ + FCY+ FAV +P++ Y+R E+
Sbjct: 118 VSAMLSVFCYTEFAVEIPVAGGSFAYLRVEL 148
>09_02_0393 +
8510089-8510274,8510450-8510806,8510889-8511011,
8511209-8511523,8511576-8511682,8512559-8512629,
8512952-8513029,8513390-8513454,8514224-8514274,
8514373-8514414,8514785-8515105,8515154-8517880
Length = 1480
Score = 27.9 bits (59), Expect = 6.5
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Frame = +3
Query: 168 DDGFSLFAFHGKLNEEMEGLESGHWSRDITKAKNGV-WTFRDRNAQLKLGDKIYFWTYVI 344
DD ++LF + E G R I + +GV + A L L + FW YV+
Sbjct: 801 DDSWALFCKLSFPDNACRETELGPIGRKIVEKSDGVPLVLKTLGAMLSLDTSLEFWNYVL 860
Query: 345 KDGL 356
L
Sbjct: 861 TSDL 864
>07_03_1091 +
23899825-23900649,23900750-23900998,23901104-23901195,
23901413-23902193
Length = 648
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 435 PPVATSTTGPLQIPQQASTPIVRP 506
PPV++ST+ P +P P +RP
Sbjct: 2 PPVSSSTSRPASLPSSPHRPALRP 25
>04_04_1059 +
30467324-30467452,30469008-30469082,30469439-30469495,
30469587-30469747,30469850-30469990,30470148-30470191,
30470854-30470972,30471039-30471138,30471347-30471453,
30471944-30471991
Length = 326
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -2
Query: 275 NAVFGFSDVPGPMPRFQAFHLFVELAVKGEERETIVW 165
N + D P P P A FV+L +K E + +W
Sbjct: 102 NRFWAIDDNPPPFPTSTAAKAFVDLILKTSEEDLKIW 138
>01_05_0595 - 23509472-23509872,23509991-23510045
Length = 151
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 202 SSTKRWKAWNRGIGPGTSLKPKTAFGRSETEMLS*NW 312
S+ + W RG+GP P T+FG E E+ NW
Sbjct: 115 SNARTWSTSWRGLGP----TPLTSFGAPEMELGGPNW 147
>07_03_0395 +
17644813-17644921,17644961-17645084,17645545-17646268,
17646971-17647219
Length = 401
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +3
Query: 147 GLRVTVP--DDGFSLFAFHGKLNEEMEGLESGHWSRDITKAKNGVWT 281
G++ T+P D FSL + +L ME + S H +R + NG++T
Sbjct: 236 GIKSTIPANPDEFSLTSSLAELVTAMEEIPSKHAARIGEETSNGIYT 282
>02_05_0092 + 25749070-25750638
Length = 522
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +3
Query: 435 PPVATSTTGPLQIPQQASTPIVRPEQTCQTSET 533
PP T + P+ I ++ P V P Q SET
Sbjct: 106 PPAVTPSVAPVYIQMPSANPAVAPVQIQMPSET 138
>02_02_0705 - 13124955-13125212,13125309-13125389,13125539-13125862
Length = 220
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -3
Query: 430 ATSTGFPFSLTNSVTVHSPLSCLYPRPSLIT 338
A+ G + L+NS+ + + SC +P P +I+
Sbjct: 92 ASVAGLAYFLSNSLAIENYFSCFFPLPIVIS 122
>01_06_0838 + 32331588-32332346
Length = 252
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +2
Query: 416 SSRRSQPTCGHIYHGSTADTPTSQHSYR*TGTDVPNV 526
SS RS P + G+T DTP S G+ VPNV
Sbjct: 221 SSSRSPPADADVLGGATCDTPVSN-----AGSCVPNV 252
>01_06_0366 -
28779899-28780543,28780813-28781076,28781165-28781431,
28781546-28781774,28781868-28781985,28782229-28782486,
28782585-28782858,28782950-28783475,28784289-28784527,
28784626-28784847,28784912-28784914,28785124-28785299,
28786147-28786201,28786288-28786557
Length = 1181
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -2
Query: 368 LPISEAILDYIRPEINLISQF*LSISVSERPNAVFGFSD 252
+ I + LD+IR +I L+SQ L S + N ++G D
Sbjct: 435 ISIKKLRLDWIRGKIGLVSQEPLLFMASIKDNIIYGKKD 473
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,719,136
Number of Sequences: 37544
Number of extensions: 389160
Number of successful extensions: 1224
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1223
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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