Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17a18
         (603 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical ...    32   0.27 
AL117205-4|CAB55162.1|  441|Caenorhabditis elegans Hypothetical ...    30   1.1  
Z68341-3|CAA92766.2|  269|Caenorhabditis elegans Hypothetical pr...    29   1.9  
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in...    29   3.4  
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in...    29   3.4  
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p...    28   4.5  
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p...    28   4.5  
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p...    28   4.5  
Z50858-2|CAD44134.1|  467|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z50858-1|CAA90721.1|  453|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AF408757-1|AAO27836.1|  456|Caenorhabditis elegans nucleobindin ...    28   5.9  
Z92970-1|CAB07480.1|  488|Caenorhabditis elegans Hypothetical pr...    27   7.8  
Z81094-6|CAB03154.1|  666|Caenorhabditis elegans Hypothetical pr...    27   7.8  
AF003130-2|AAB54125.2|  426|Caenorhabditis elegans Adaptin, mu/m...    27   7.8  
AC199172-11|ABO33270.1|  311|Caenorhabditis elegans F-box a prot...    27   7.8  
AB072567-1|BAB88817.1|  488|Caenorhabditis elegans ceERp57 protein.    27   7.8  

>AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical
           protein Y106G6D.7 protein.
          Length = 948

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = +3

Query: 351 GLGYRQDNGEWTVTEFVNENGNPVDVANPPVATSTTGPLQIPQQASTPIVRPEQ 512
           G G RQ N E  +   V E  NP    N P AT  +GP+  P   + P+   +Q
Sbjct: 695 GEGKRQMNEEARLQHEVAEKANPPSFFNAPAATRGSGPMP-PLNGTAPLPSGQQ 747


>AL117205-4|CAB55162.1|  441|Caenorhabditis elegans Hypothetical
           protein Y116A8A.4 protein.
          Length = 441

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
 Frame = +3

Query: 261 AKNGVWTFRDRNAQLKLGDKIYFWTYVIKDGLGYR------QDNGEWTVTEFVNENGNPV 422
           A NGV    D     KLGD ++F+ Y   D L ++      +D G  T T +  E G P+
Sbjct: 181 AFNGVPCLADETTSSKLGDVVHFYGYSDYDLLHHKLLIKAVKDGGICTETYYTEEVGGPL 240


>Z68341-3|CAA92766.2|  269|Caenorhabditis elegans Hypothetical
           protein F01G4.5 protein.
          Length = 269

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 372 NGEWTVTEFVNENGNPVDVANPPVATSTTGPLQIPQQASTPI 497
           N EWTV EF ++ GN  D  N  +    + P  +  + +TP+
Sbjct: 47  NWEWTVNEFWDQTGNVADNLNGTITWLRSNPAGL--KLNTPV 86


>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
            interacting proteinprotein 1, isoform d protein.
          Length = 2350

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +3

Query: 354  LGYRQDNGEWTVTEFVNENGNPVDVANPPVATSTTGPLQIPQQASTPIVRPEQT 515
            LG R   G+ ++   +N  G    V   P +T  + PL  P  +STP  RP  T
Sbjct: 2174 LGIRNSYGDNSIDAIIN--GGSRSVGFYPRSTFASNPLTPPLGSSTPTHRPHVT 2225


>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
            interacting proteinprotein 1, isoform a protein.
          Length = 2396

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +3

Query: 354  LGYRQDNGEWTVTEFVNENGNPVDVANPPVATSTTGPLQIPQQASTPIVRPEQT 515
            LG R   G+ ++   +N  G    V   P +T  + PL  P  +STP  RP  T
Sbjct: 2247 LGIRNSYGDNSIDAIIN--GGSRSVGFYPRSTFASNPLTPPLGSSTPTHRPHVT 2298


>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
            protein K07E12.1b protein.
          Length = 12268

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +3

Query: 399  VNENGNPVDVANPPVATSTTGPLQIPQQASTPIVRP 506
            VNE+G+P+DV   P+  +  G    P++++    +P
Sbjct: 2289 VNEDGDPIDVNGKPLEKNEDGKFVKPKESTQETPQP 2324


>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
            protein K07E12.1a protein.
          Length = 13100

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +3

Query: 399  VNENGNPVDVANPPVATSTTGPLQIPQQASTPIVRP 506
            VNE+G+P+DV   P+  +  G    P++++    +P
Sbjct: 2352 VNEDGDPIDVNGKPLEKNEDGKFVKPKESTQETPQP 2387


>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
            protein.
          Length = 13100

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +3

Query: 399  VNENGNPVDVANPPVATSTTGPLQIPQQASTPIVRP 506
            VNE+G+P+DV   P+  +  G    P++++    +P
Sbjct: 2352 VNEDGDPIDVNGKPLEKNEDGKFVKPKESTQETPQP 2387


>Z50858-2|CAD44134.1|  467|Caenorhabditis elegans Hypothetical
           protein F44A6.1b protein.
          Length = 467

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/28 (50%), Positives = 14/28 (50%)
 Frame = +3

Query: 399 VNENGNPVDVANPPVATSTTGPLQIPQQ 482
           VN N  PV  A PPV      P Q PQQ
Sbjct: 415 VNANPPPVQNAQPPVQQQQQPPQQPPQQ 442


>Z50858-1|CAA90721.1|  453|Caenorhabditis elegans Hypothetical
           protein F44A6.1a protein.
          Length = 453

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/28 (50%), Positives = 14/28 (50%)
 Frame = +3

Query: 399 VNENGNPVDVANPPVATSTTGPLQIPQQ 482
           VN N  PV  A PPV      P Q PQQ
Sbjct: 401 VNANPPPVQNAQPPVQQQQQPPQQPPQQ 428


>AF408757-1|AAO27836.1|  456|Caenorhabditis elegans nucleobindin
           protein.
          Length = 456

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/28 (50%), Positives = 14/28 (50%)
 Frame = +3

Query: 399 VNENGNPVDVANPPVATSTTGPLQIPQQ 482
           VN N  PV  A PPV      P Q PQQ
Sbjct: 404 VNANPPPVQNAQPPVQQQQQPPQQPPQQ 431


>Z92970-1|CAB07480.1|  488|Caenorhabditis elegans Hypothetical
           protein H06O01.1 protein.
          Length = 488

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 17/65 (26%), Positives = 28/65 (43%)
 Frame = +3

Query: 231 SGHWSRDITKAKNGVWTFRDRNAQLKLGDKIYFWTYVIKDGLGYRQDNGEWTVTEFVNEN 410
           S +W   + K          R  Q  + +K  F + +  +GLG R+D+ +  V    NE 
Sbjct: 268 SNYWRNRVLKVAQNY----KRKVQFAVSNKEEFSSEIETNGLGERKDSDKPIVAILTNEG 323

Query: 411 GNPVD 425
             P+D
Sbjct: 324 KYPMD 328


>Z81094-6|CAB03154.1|  666|Caenorhabditis elegans Hypothetical
           protein F58G11.3a protein.
          Length = 666

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 396 FVNENGNPVDVANPPVATSTTGPLQIPQQAST 491
           F   +G+  +  NPPVA S   PL  P  AS+
Sbjct: 191 FGKSSGSNANPTNPPVAPSIQRPLMRPSTASS 222


>AF003130-2|AAB54125.2|  426|Caenorhabditis elegans Adaptin,
           mu/medium chain (clathrinassociated complex) protein 1
           protein.
          Length = 426

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 357 GYRQDNGEWTVTEFVNENGNPVDVANPPVATS 452
           GY Q      + EF+ + GN ++   PP+A +
Sbjct: 121 GYPQTTESKILQEFITQQGNRLETVRPPMAVT 152


>AC199172-11|ABO33270.1|  311|Caenorhabditis elegans F-box a protein
           protein 50, isoforma protein.
          Length = 311

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 342 IKDGLGYRQDNGEWTVTEFVNENGNPVDVA 431
           I+D L  R+   +W V  F+  N NP+++A
Sbjct: 239 IRDDL-LRRSTFQWCVIRFLRPNANPIEIA 267


>AB072567-1|BAB88817.1|  488|Caenorhabditis elegans ceERp57 protein.
          Length = 488

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 17/65 (26%), Positives = 28/65 (43%)
 Frame = +3

Query: 231 SGHWSRDITKAKNGVWTFRDRNAQLKLGDKIYFWTYVIKDGLGYRQDNGEWTVTEFVNEN 410
           S +W   + K          R  Q  + +K  F + +  +GLG R+D+ +  V    NE 
Sbjct: 268 SNYWRNRVLKVAQNY----KRKVQFAVSNKEEFSSEIETNGLGERKDSDKPIVAILTNEG 323

Query: 411 GNPVD 425
             P+D
Sbjct: 324 KYPMD 328


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,650,793
Number of Sequences: 27780
Number of extensions: 320441
Number of successful extensions: 1040
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1040
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)