Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17a18
         (603 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    27   0.11 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    27   0.11 
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   1.7  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.3  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    23   2.3  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   5.3  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   7.0  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 435 PPVATSTTGPLQIPQQASTPIVRPEQTCQTSE 530
           PPV    +G + + Q  ST +V   Q C T E
Sbjct: 237 PPVILENSGVVHVAQDESTSLVCVAQACPTPE 268


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 435 PPVATSTTGPLQIPQQASTPIVRPEQTCQTSE 530
           PPV    +G + + Q  ST +V   Q C T E
Sbjct: 237 PPVILENSGVVHVAQDESTSLVCVAQACPTPE 268


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 427 TSTGFPFSLTNSVTVHSPLSCLYP 356
           T   F FS+    T H+PLS  +P
Sbjct: 304 TPGSFNFSMAALATEHTPLSVKFP 327


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 601 LFFSNSSLKIKVPLQILSRPWTT 533
           LF+   SL+I +P +    PW T
Sbjct: 123 LFYLLVSLRIDLPWRTCGNPWNT 145


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 601 LFFSNSSLKIKVPLQILSRPWTT 533
           LF+   SL+I +P +    PW T
Sbjct: 176 LFYLLVSLRIDLPWRTCGNPWNT 198


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 317 ISQF*LSISVSERPNAVFGFSDVPG 243
           ++ F L+I V     A FGF+  PG
Sbjct: 53  LADFGLAIEVQGEAQAWFGFAGTPG 77


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 327 FWTYVIKDGLGYRQDN 374
           F+T V+ D + YR DN
Sbjct: 248 FFTRVVTDTIKYRNDN 263


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = +3

Query: 114 PPAKLEAIYPAGLRVTVPDDGFSLFAFHGKLNEEMEGLESGHWSRDITKA 263
           P A +  +YP  +   V D+G S   F   +  + E  E    S+ + KA
Sbjct: 156 PVALINELYPGVVYKCVSDNGESYAKFTISVTIDGETFEGTGPSKKLAKA 205


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,435
Number of Sequences: 438
Number of extensions: 3838
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)