Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17a17
         (676 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU457741-20|CAO82033.1|  206|Caenorhabditis elegans Hypothetical...    42   3e-04
CU457741-19|CAM36356.1|  167|Caenorhabditis elegans Hypothetical...    41   7e-04
U80441-8|AAB37656.1|  284|Caenorhabditis elegans Dumpy : shorter...    31   0.99 
Z70309-6|CAA94360.1|  324|Caenorhabditis elegans Hypothetical pr...    30   1.7  
AF039053-3|AAC25880.2|  349|Caenorhabditis elegans Hypothetical ...    29   2.3  
U55365-9|AAA98574.1|  346|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z81066-1|CAB02970.1|  919|Caenorhabditis elegans Hypothetical pr...    29   4.0  
Z75529-7|CAE54888.1|  382|Caenorhabditis elegans Hypothetical pr...    28   7.0  
Z75529-6|CAA99785.1|  269|Caenorhabditis elegans Hypothetical pr...    28   7.0  
Z66514-2|CAA91342.1|  229|Caenorhabditis elegans Hypothetical pr...    28   7.0  
Z81562-3|CAB04557.1|  352|Caenorhabditis elegans Hypothetical pr...    27   9.2  
U39998-3|AAO38584.1|  460|Caenorhabditis elegans Hypothetical pr...    27   9.2  
U39998-2|AAL00881.1|  484|Caenorhabditis elegans Hypothetical pr...    27   9.2  
U39998-1|AAO38583.1|  475|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AL023851-2|CAA19555.2|  209|Caenorhabditis elegans Hypothetical ...    27   9.2  
AF039046-13|AAB94213.1|  551|Caenorhabditis elegans Hypothetical...    27   9.2  

>CU457741-20|CAO82033.1|  206|Caenorhabditis elegans Hypothetical
           protein C42C1.13b protein.
          Length = 206

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 32/90 (35%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
 Frame = +2

Query: 209 VGRQVWRGAFLLGDWLIHLGLK--GELSNKNVLELGAGTGVTSIVAALFAEKVVCTDINV 382
           VG  +W  A +     IH   K       K VLELG+GTGV  I  A     V+ TD+  
Sbjct: 30  VGGVIWDSALMT----IHYFFKYPKPFEGKKVLELGSGTGVGGIALAALGADVIITDLPE 85

Query: 383 GGILDLINLNAKYNKDLIKSHFSVMPLDFT 472
              L LI  N + N+ L  +   V  LD+T
Sbjct: 86  R--LALIEKNVEANRKLTGNRIKVQVLDWT 113


>CU457741-19|CAM36356.1|  167|Caenorhabditis elegans Hypothetical
           protein C42C1.13a protein.
          Length = 167

 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 25/61 (40%), Positives = 32/61 (52%)
 Frame = +2

Query: 290 KNVLELGAGTGVTSIVAALFAEKVVCTDINVGGILDLINLNAKYNKDLIKSHFSVMPLDF 469
           K VLELG+GTGV  I  A     V+ TD+     L LI  N + N+ L  +   V  LD+
Sbjct: 16  KKVLELGSGTGVGGIALAALGADVIITDLPER--LALIEKNVEANRKLTGNRIKVQVLDW 73

Query: 470 T 472
           T
Sbjct: 74  T 74


>U80441-8|AAB37656.1|  284|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 5 protein.
          Length = 284

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +2

Query: 290 KNVLELGAGTGVTSIVAALFAEKVVCTDIN 379
           K V+  GA  G+++IVA L+A  V+  DIN
Sbjct: 3   KAVVGFGAACGISAIVACLWAALVITNDIN 32


>Z70309-6|CAA94360.1|  324|Caenorhabditis elegans Hypothetical
           protein R102.6 protein.
          Length = 324

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = -2

Query: 603 FKLSIFCIVDMKAAVTSSSYITSAAIMKSTSLITLLSFELHAVSVKSSGITEKCDF 436
           F L +   VD      S + +   +I+ +T L+ ++ FE++ +SV        CDF
Sbjct: 130 FVLILHLFVDFLDTANSKNTVEMQSILHNTVLLFMICFEVYMLSVVWRAFVYICDF 185


>AF039053-3|AAC25880.2|  349|Caenorhabditis elegans Hypothetical
           protein C45H4.13 protein.
          Length = 349

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/27 (48%), Positives = 21/27 (77%)
 Frame = -2

Query: 402 IRSRIPPTLMSVHTTFSANRAATILVT 322
           IR+ +PPT +++HT  S+++AAT L T
Sbjct: 83  IRTLLPPTPVTLHTLQSSHQAATTLHT 109


>U55365-9|AAA98574.1|  346|Caenorhabditis elegans Hypothetical
           protein C12D5.9 protein.
          Length = 346

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = -2

Query: 237 NAPLHTCRPTKDIAVLGLCSILITFLLGLTASRSPSSSNLAVCPVMGSKNGNSDMTSC 64
           N+PL  C P +   + G C   +  L+ LT    P+   + +   M S      +TSC
Sbjct: 26  NSPLRVCTPKEQFVLEGKCLRYVNDLMYLTEEYPPTQITVPIAKNMSS--ACEKITSC 81


>Z81066-1|CAB02970.1|  919|Caenorhabditis elegans Hypothetical
           protein F17B5.2 protein.
          Length = 919

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +2

Query: 317 TGVTSIVAALFAEKVVCTDINVGGILDLINLNAKYNKDLIKSHFSV 454
           T +  +V  LF   V+   IN   ILD ++L    N+D++ S+ +V
Sbjct: 361 TNIGVLVVTLFLLNVIV--INKDDILDRVHLRTNSNRDIVTSNMTV 404


>Z75529-7|CAE54888.1|  382|Caenorhabditis elegans Hypothetical
           protein C44H9.7b protein.
          Length = 382

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -2

Query: 348 NRAATILVTPVPAPNSRTFLLESSPFKPRCINQSPNRNAPLHTC 217
           N  A I V P+P      F+  +S      +   PNR+  + TC
Sbjct: 111 NNFANITVQPIPQIPKLRFITNNSSGSHELLEHCPNRSRTITTC 154


>Z75529-6|CAA99785.1|  269|Caenorhabditis elegans Hypothetical
           protein C44H9.7a protein.
          Length = 269

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -2

Query: 348 NRAATILVTPVPAPNSRTFLLESSPFKPRCINQSPNRNAPLHTC 217
           N  A I V P+P      F+  +S      +   PNR+  + TC
Sbjct: 111 NNFANITVQPIPQIPKLRFITNNSSGSHELLEHCPNRSRTITTC 154


>Z66514-2|CAA91342.1|  229|Caenorhabditis elegans Hypothetical
           protein K01A11.2 protein.
          Length = 229

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 284 SNKNVLELGAGTGVTSIVAALF-AEKVVCTDINVGGI 391
           + K+VLELG G  + SI+ A+  A++V   D N   I
Sbjct: 75  AGKSVLELGCGAALPSILTAVHGAKEVFAQDFNASVI 111


>Z81562-3|CAB04557.1|  352|Caenorhabditis elegans Hypothetical
           protein K03D7.6 protein.
          Length = 352

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 192 LGLCSILITFLLGLTASRSPSSSNLAVC 109
           LG+C I++TF+  LT       +NL  C
Sbjct: 270 LGMCPIMLTFMAFLTGHYYQEMANLTFC 297


>U39998-3|AAO38584.1|  460|Caenorhabditis elegans Hypothetical
           protein ZK622.3d protein.
          Length = 460

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +2

Query: 281 LSNKNVLELGAGTGVTSIVAALFAEKVVCTD 373
           L NK+V+++GAG G  + V A  A  V+ TD
Sbjct: 49  LHNKDVVDIGAGIGRFTTVLAETARWVLSTD 79


>U39998-2|AAL00881.1|  484|Caenorhabditis elegans Hypothetical
           protein ZK622.3b protein.
          Length = 484

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +2

Query: 281 LSNKNVLELGAGTGVTSIVAALFAEKVVCTD 373
           L NK+V+++GAG G  + V A  A  V+ TD
Sbjct: 73  LHNKDVVDIGAGIGRFTTVLAETARWVLSTD 103


>U39998-1|AAO38583.1|  475|Caenorhabditis elegans Hypothetical
           protein ZK622.3a protein.
          Length = 475

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +2

Query: 281 LSNKNVLELGAGTGVTSIVAALFAEKVVCTD 373
           L NK+V+++GAG G  + V A  A  V+ TD
Sbjct: 64  LHNKDVVDIGAGIGRFTTVLAETARWVLSTD 94


>AL023851-2|CAA19555.2|  209|Caenorhabditis elegans Hypothetical
           protein Y68A4B.2 protein.
          Length = 209

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
 Frame = -2

Query: 426 LLYFAFRFIRSRIPPTLM---SVHTTFSANRAATILVTPVPAPNSRTFLLESSPFKPRCI 256
           LL F F  + S IP   +   S  TT +    +T   TP+P P       +  P  P CI
Sbjct: 2   LLLFIFPVVNSCIPTQQVETTSTTTTTTTTTTSTTTTTPIPCPTGWA-QSDERPSGPWCI 60


>AF039046-13|AAB94213.1|  551|Caenorhabditis elegans Hypothetical
           protein R09B5.4 protein.
          Length = 551

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
 Frame = +2

Query: 236 FLLG-DWLIHLGLKGELSNKN--VLELGAGTGVTS--IVAALFAEKVVCTDINVGGILDL 400
           F+ G DW++ LG  G LSN N  +L L   T V +  +  AL     +   + + GI  L
Sbjct: 182 FITGRDWVMVLGNDGTLSNMNATLLTLDQCTNVIAPLVTGALVTWVGLRETVGIFGIASL 241

Query: 401 INLNAK 418
           +++ +K
Sbjct: 242 VSMASK 247


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,240,635
Number of Sequences: 27780
Number of extensions: 305879
Number of successful extensions: 898
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)