Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17a17
         (676 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    25   0.87 
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    24   1.5  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 24.6 bits (51), Expect = 0.87
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -2

Query: 450 EKCDFIKSLLYFAFRFIRSRIPPTLMSVHTTFSANRAATI 331
           +KC F + L Y  F    S   P  + V T +   RAA I
Sbjct: 196 DKCPFTEHLGYLIFSSTISFYLPLFVMVFTYYKIYRAAVI 235



 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 593 LNLKPPKTVYVVLEKRYVFTIEHLD 667
           L + P   +Y VLE R++FT +  D
Sbjct: 96  LVVMPFSAIYEVLENRWLFTTDWCD 120


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -2

Query: 522 KSTSLITLLSFELHAVSVKSSGITEKCDFIKSLLYFAF 409
           K  + +  LSF   + ++ S  + E+C+F K+   F+F
Sbjct: 117 KCAAFLFQLSFATTSTTIVSGAMAERCNF-KAYCLFSF 153


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,649
Number of Sequences: 438
Number of extensions: 3927
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)