Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17a16
(655 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi... 29 0.77
SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces pombe... 28 1.4
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch... 27 2.4
SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1... 27 3.1
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|... 27 3.1
SPAC1565.07c |||TATA binding protein interacting protein |Schizo... 26 4.1
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 25 7.2
SPAC57A10.14 |sgf11||SAGA complex subunit Sgf11 |Schizosaccharom... 25 7.2
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 25 9.5
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ... 25 9.5
SPAC31G5.05c |||ribulose phosphate 3-epimerase |Schizosaccharomy... 25 9.5
>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 749
Score = 28.7 bits (61), Expect = 0.77
Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = +2
Query: 356 KKAHSKK--RKPFDVLKHRLAGTEAEPFINKLRKTTATPSTTKVNK 487
+K+H+KK KP V+ +R+ +PF ++ ++ T+ PS+ NK
Sbjct: 593 QKSHAKKLQSKPSSVVPNRIT---TDPFSSQTKEATSKPSSISPNK 635
>SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 306
Score = 27.9 bits (59), Expect = 1.4
Identities = 21/92 (22%), Positives = 40/92 (43%)
Frame = +2
Query: 326 DRIAKHQEICKKAHSKKRKPFDVLKHRLAGTEAEPFINKLRKTTATPSTTKVNKGKQLNS 505
++I + Q+ K H K + + K R E +P +LR + P+T + +K +
Sbjct: 6 NKIVRQQQYMKALHQKNKDKLERRKERAKEEEKDPEKKRLRLSENIPATIE-SKRVYDET 64
Query: 506 NWRQKHEEFIQAIRAAKQVQAHLNAGGKLSDL 601
K +E +QA + A+ + K+ L
Sbjct: 65 IIEDKPDEELQAELKDDEFSAYFSEERKVPKL 96
>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.1 bits (57), Expect = 2.4
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 428 PFINKLRKTTATPSTTKVNKG 490
P + K++K + PSTT VN+G
Sbjct: 422 PLLEKIKKQGSLPSTTPVNEG 442
>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 588
Score = 26.6 bits (56), Expect = 3.1
Identities = 7/12 (58%), Positives = 12/12 (100%)
Frame = -3
Query: 203 HAYHRWFSGCCV 168
HA++R+F+GCC+
Sbjct: 362 HAFYRYFAGCCL 373
>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 310
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 297 AASAVDTSPPIASLN-TRRSAKRPTARRGNPLMYS 398
A SAVDTS +AS+ +R A+ P + P Y+
Sbjct: 91 ATSAVDTSEAVASMTPNKRKARDPAQPKRPPSAYN 125
>SPAC1565.07c |||TATA binding protein interacting protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1220
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +2
Query: 362 AHSKKRKPFDVLKHRLAGTEAEPFINKLRKTTATPSTTKVNK 487
A K + L L+ + +PF+NK +T PS ++ K
Sbjct: 94 AGKKSKNYLSALSLLLSNSNVQPFVNKFYTSTVFPSFLQILK 135
>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 782
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +3
Query: 336 LNTRRSAKRPTARRGNPLMYSNIVW 410
LNT +S P + NPL++ ++ W
Sbjct: 678 LNTAQSENLPIYEQENPLLFDSLSW 702
>SPAC57A10.14 |sgf11||SAGA complex subunit Sgf11
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 117
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 293 ACGVCGRHFASDRIAKHQEICK 358
+C +C R A+ R A H E CK
Sbjct: 73 SCLMCKREIAASRYAAHLEKCK 94
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 25.0 bits (52), Expect = 9.5
Identities = 8/32 (25%), Positives = 17/32 (53%)
Frame = +2
Query: 293 ACGVCGRHFASDRIAKHQEICKKAHSKKRKPF 388
+C +CGR F + +H + + ++RK +
Sbjct: 205 SCSICGRQFKTAAHLRHHVVLHQTTLEERKTY 236
>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 557
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -3
Query: 650 NEDTARSPDSPTAEGAADRSAYLQHSNV 567
N+D++ S +S + GA RS + + SNV
Sbjct: 521 NDDSSASSESFASAGAHSRSVFPRRSNV 548
>SPAC31G5.05c |||ribulose phosphate 3-epimerase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 228
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +2
Query: 317 FASDRIAKHQEICKKAHSKKRKPFDVLKHRLAGTEAEPFINKL 445
F + KH+EI +AH K LK + PF+ KL
Sbjct: 93 FHYEATEKHEEIISRAHEKGMLVGCALKPKTPVEVILPFVEKL 135
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,266,629
Number of Sequences: 5004
Number of extensions: 40188
Number of successful extensions: 128
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -