Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17a16
         (655 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0036 - 9950353-9950379,9950753-9950791,9951021-9951194,995...    29   4.3  
12_01_0788 + 7192937-7192994,7193074-7193160,7193242-7193307,719...    28   5.6  
09_06_0010 - 20193577-20193921,20194014-20194160,20194239-201944...    28   7.5  
05_04_0061 + 17582368-17582606,17582716-17583090,17593677-17594265     27   9.9  
05_01_0334 - 2642998-2643063,2643125-2643169,2643552-2643617,264...    27   9.9  

>04_03_0036 -
           9950353-9950379,9950753-9950791,9951021-9951194,
           9951287-9951415,9951782-9952012,9952655-9952732,
           9953035-9953055,9953790-9953855,9953935-9954015,
           9954148-9954920,9955461-9955654,9956723-9956817,
           9958190-9958219,9958334-9958453,9959185-9959262,
           9959428-9959505,9960459-9960488,9960614-9960739,
           9961239-9961379,9963416-9963532,9963619-9963670,
           9963759-9963890,9964668-9964720,9964816-9964911,
           9965255-9965260,9965416-9965561,9966494-9966629,
           9966885-9967038,9968017-9968154,9968268-9968614
          Length = 1295

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 20/61 (32%), Positives = 28/61 (45%)
 Frame = -2

Query: 552 AARIAWMNSSCFCRQLLFNCLPLFTLVVDGVAVVLRNLLIKGSASVPAKRCLSTSKGFLF 373
           AA+  W+++           + L T+V DG  VV R  L+K  ASV +    S    F F
Sbjct: 373 AAKATWLSNDIVMFSTKAGEMLLLTVVYDG-RVVQRLDLMKSKASVLSSAVTSIGNSFFF 431

Query: 372 L 370
           L
Sbjct: 432 L 432


>12_01_0788 +
           7192937-7192994,7193074-7193160,7193242-7193307,
           7193447-7193555,7194522-7194785,7194919-7195006,
           7195085-7195708,7196017-7196140,7196195-7196337,
           7196434-7196649,7196781-7196873,7196952-7197032,
           7197120-7197504,7197599-7197636
          Length = 791

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 28/109 (25%), Positives = 40/109 (36%), Gaps = 9/109 (8%)
 Frame = +2

Query: 113 FNLGIGDE*DTGCYAT--TSQHNTQKTTCGTHVMKANSAGSGTPKGRXXXXXXXXXXXXX 286
           FNL + +    GC     +S + T +  C TH +K+    S                   
Sbjct: 524 FNLDLSEPHVKGCLELLFSSSYKTFRHRCYTHYLKSGGGDSARNS------PYEPLRDRP 577

Query: 287 GDACGVCGRHFASDRIAKHQEICK-------KAHSKKRKPFDVLKHRLA 412
           GD   +C  HF ++   K   I K         H K  KPF  L+H L+
Sbjct: 578 GDWTWLCD-HFETEEFQKKSVIGKANRMKLANVHKKGTKPFVALQHELS 625


>09_06_0010 -
           20193577-20193921,20194014-20194160,20194239-20194495,
           20194619-20194826
          Length = 318

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = +2

Query: 416 TEAEPFINKLRKTTATPSTTKVNKGKQLNSNWRQKHEEFIQAIRAAKQVQAHLNAGG 586
           T  E  +N+L K  A  +  +V   +++     QK+ E + AIR AK   +H  A G
Sbjct: 176 TLTEALMNELVKLDAIAAEGEVKVQRRMQEKRVQKYVESLDAIR-AKNAASHNKASG 231


>05_04_0061 + 17582368-17582606,17582716-17583090,17593677-17594265
          Length = 400

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -3

Query: 203 HAYHRWFSGCCVGWSLHS 150
           HA  RWFS   VGW L S
Sbjct: 88  HALERWFSELDVGWVLRS 105


>05_01_0334 -
           2642998-2643063,2643125-2643169,2643552-2643617,
           2643625-2643730,2643770-2644349,2645780-2645871,
           2645969-2646035,2646126-2646231,2646628-2646708,
           2646789-2647058,2647158-2648788,2648834-2649385,
           2650602-2651324,2651451-2651526
          Length = 1486

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 311 RHFASDRIAKHQEICKKAHSKK 376
           RHF  +   +H E+C   HSK+
Sbjct: 676 RHFCRNNPGEHTELCSNKHSKR 697


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,527,538
Number of Sequences: 37544
Number of extensions: 293129
Number of successful extensions: 898
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)