Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17a15
         (579 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ...    29   0.37 
SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.0  
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc...    25   6.1  
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    25   6.1  
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    25   8.0  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    25   8.0  

>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
           pyridoxine, pyridoxal, and pyridoxamine
           Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 29.5 bits (63), Expect = 0.37
 Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -2

Query: 209 IFSSDHMSHPSYWLF-HVWSLILLYYCIPVVASW 111
           + SSDH +HP  W +   WS++ ++  + +   W
Sbjct: 63  LISSDHPAHPQNWHWAKRWSIVFMFCLMQIYVIW 96


>SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 172

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 185 HPSYWLFHVWSLILLYYCIPVV 120
           +P YW F +  L+ L+YC  V+
Sbjct: 65  YPEYWAFKLVELLSLFYCAYVM 86


>SPAC12B10.03 |||WD repeat protein, human WDR20
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +2

Query: 422 ETLQVPPGIVKHRNSFRSLHRPDLKRVPYLRRMKP 526
           E   VP  +  +RNS R  H       PYL+  +P
Sbjct: 90  ENRDVPSILENYRNSKRKSHNFSSSNTPYLKLHRP 124


>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 356 YAPNLHLSVIPVPHNKEQG 300
           Y P    S++P+P NK +G
Sbjct: 333 YGPTQEQSILPLPENKHEG 351


>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 9/33 (27%), Positives = 21/33 (63%)
 Frame = +2

Query: 374 SVKHDSALQCLSMSNCETLQVPPGIVKHRNSFR 472
           +++H+S    L+ S+ +++Q  P I ++  +FR
Sbjct: 102 TIRHESMPSALAGSSAQSMQQFPSITQNEENFR 134


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 18/75 (24%), Positives = 34/75 (45%)
 Frame = +2

Query: 350 VRSGLSAISVKHDSALQCLSMSNCETLQVPPGIVKHRNSFRSLHRPDLKRVPYLRRMKPD 529
           + S  S  +VK +     LS+ +  + +      K  N     H  D+ + P+  +  P+
Sbjct: 3   LHSKKSTSTVKDNEHSLDLSIKSIPSNEKNFSTEKSENEASESHVVDVVKDPF-EQYTPE 61

Query: 530 ELELLFRGYADLPAR 574
           E E+L++   D PA+
Sbjct: 62  EQEILYKQINDTPAK 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,298,738
Number of Sequences: 5004
Number of extensions: 45198
Number of successful extensions: 122
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)