Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17a13
         (513 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   3.2  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          21   7.5  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        21   9.9  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   9.9  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   9.9  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 11  ANLKPYRQ*KSSGTSSIPKFHSSLQDLKQP 100
           A+ +P +  +SS  SSIPK + S   + QP
Sbjct: 351 ASPEPPKSSESSTGSSIPKLNLSTALMSQP 380


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -1

Query: 264 GYGGSLITLLP 232
           G+GGS+IT+ P
Sbjct: 87  GFGGSIITIPP 97


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 104 GLVVLDPEDWSEISVLNWS 48
           G+ V+D E W  I   NW+
Sbjct: 138 GVGVIDFESWRPIFRQNWA 156


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 93  NNQAFKSQDALPPVS 137
           + Q  KSQ +LPPVS
Sbjct: 288 STQHAKSQASLPPVS 302


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 388 KSSGGCSLSWF 420
           +SSGG  L WF
Sbjct: 59  ESSGGVELGWF 69


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,294
Number of Sequences: 438
Number of extensions: 2584
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14232156
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)