Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17a12
         (539 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    46   5e-06
SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomy...    31   0.14 
SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|ch...    26   4.1  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    25   5.4  
SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyce...    25   7.2  
SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase ...    25   7.2  
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    25   7.2  
SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.2  
SPBC56F2.11 |met6||homoserine O-acetyltransferase|Schizosaccharo...    25   9.5  

>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 905

 Score = 45.6 bits (103), Expect = 5e-06
 Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
 Frame = +1

Query: 274  NFAIVHILGKQWRVTDGDLLVVEGYWPP-NIGDQITLDKVLVAATKDFSLIGRPLVQPGL 450
            ++A  +I  + + +  GD L +  +     +GD I LDK+    ++DF+L G P V P L
Sbjct: 805  HYADAYIFNRHFVIAKGDQLGLPFHLKGVQVGDTIRLDKIASFGSRDFTLFGNPYVDPSL 864

Query: 451  VTVTATIIS 477
             T+ A ++S
Sbjct: 865  FTIEAVVLS 873


>SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 30.7 bits (66), Expect = 0.14
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
 Frame = -1

Query: 233 MTSFDVSATDLFSDGTKLVTNLDKIPPC------VPPNILATLCSPDRRSAMIDDNYLLL 72
           +T FD +  +++  G K+++N+D++  C      VP   LA L SP+ +  +IDD   + 
Sbjct: 260 ITKFDPTTREIYLKGGKVLSNIDRVIYCTGYLYSVPFPSLAKLKSPETK--LIDDGSHVH 317

Query: 71  NTSMCLKLIP 42
           N    +  IP
Sbjct: 318 NVYQHIFYIP 327


>SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +1

Query: 55  KHIEVFNNK*LSSIMALLRSGLQRVAN 135
           KHI  F++  LSS+  L RS + R+AN
Sbjct: 87  KHIACFHHLLLSSLPCLPRSEIYRLAN 113


>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 371 K*HWIKYLLLPLKTSRLLAAHWSNL 445
           K HW+KY       ++LL + WSNL
Sbjct: 886 KKHWLKYKKNRSTFAKLLFSTWSNL 910


>SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 324

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -3

Query: 438 DQWAANKREVFSGSNKYFIQCYLI 367
           ++W+  K +VF  S+++F  C +I
Sbjct: 276 EKWSPGKYDVFGSSHQWFHVCVII 299


>SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 7/26 (26%), Positives = 17/26 (65%)
 Frame = +2

Query: 41  KELTLNTLKYLITNNYHLSWHFCDRD 118
           ++  ++ L+Y+   N  L+W+FC ++
Sbjct: 159 QDFNVDVLRYVTLPNLLLNWYFCTQE 184


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = -3

Query: 447 SRLDQWAANKREVFSGSNKYFIQCYLITDVWWPVAFDDKEITISHAPLF 301
           SR+ Q +A    V + ++ Y    Y  TDV +P+A DDK  ++   P F
Sbjct: 174 SRIGQKSARLEHVDTMNSSY--SSYK-TDVKYPLALDDKLSSVPTLPKF 219


>SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr
          2|||Manual
          Length = 119

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 1  RLSNFQNVLIFKWEGINFKHIEV 69
          + SN QN+ IF W+  NF+ I +
Sbjct: 9  QFSNLQNIKIFTWKA-NFESIRI 30


>SPBC56F2.11 |met6||homoserine
           O-acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 489

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 7/39 (17%)
 Frame = +1

Query: 97  MALLRSGLQRVANIFGGTQGGIL-------SRFVTSLVP 192
           + L R G++++A   GG+ GG+L         FV S+VP
Sbjct: 146 LILQRLGVKQIAMAVGGSMGGMLVLEWAFDKEFVRSIVP 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,395,443
Number of Sequences: 5004
Number of extensions: 51089
Number of successful extensions: 169
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)