Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17a12
(539 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0328 - 9004670-9004753,9004873-9004947,9005031-9005132,900... 42 3e-04
05_07_0078 - 27536211-27536282,27536396-27536470,27537411-275375... 38 0.005
02_04_0376 - 22474473-22476947 31 0.78
04_04_0214 - 23674270-23676858,23677574-23680843,23680941-236811... 29 1.8
11_03_0127 - 10408628-10409106,10409188-10409821 29 3.1
08_01_0709 + 6265949-6266452,6267697-6267786,6268257-6268402,626... 29 3.1
01_02_0104 + 11163634-11163691,11163929-11164193,11165041-111651... 29 3.1
03_03_0219 - 15519076-15520050,15520376-15520579,15520755-155207... 28 5.5
05_02_0083 + 6450694-6450766,6451391-6451560,6451633-6451704,645... 27 7.2
12_02_0388 - 18486957-18487016,18487286-18489418,18489985-184904... 27 9.6
12_02_0333 + 17660454-17660502,17660587-17660704,17661181-176612... 27 9.6
10_01_0266 + 2816391-2818898,2818934-2819162,2819369-2819444,281... 27 9.6
02_03_0121 + 15468894-15468906,15469008-15469193,15474157-154746... 27 9.6
>02_02_0328 -
9004670-9004753,9004873-9004947,9005031-9005132,
9005681-9005761,9006233-9006535
Length = 214
Score = 41.9 bits (94), Expect = 3e-04
Identities = 21/54 (38%), Positives = 33/54 (61%)
Frame = +1
Query: 277 FAIVHILGKQWRVTDGDLLVVEGYWPPNIGDQITLDKVLVAATKDFSLIGRPLV 438
FA+V I +Q+ V G + + N+ DQI L+KVL+ +T+D + IG P+V
Sbjct: 97 FAVVMIGSRQYIVMPGRYIYTQRLKGANVNDQIILNKVLLVSTRDKAYIGMPVV 150
>05_07_0078 -
27536211-27536282,27536396-27536470,27537411-27537512,
27538153-27538233,27538322-27538744
Length = 250
Score = 37.9 bits (84), Expect = 0.005
Identities = 18/59 (30%), Positives = 36/59 (61%)
Frame = +1
Query: 277 FAIVHILGKQWRVTDGDLLVVEGYWPPNIGDQITLDKVLVAATKDFSLIGRPLVQPGLV 453
FA+V I Q++V++GD + E ++ D++ L++VL+ ++ ++IGRP + V
Sbjct: 137 FAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNRVLMLGSQSQTVIGRPTLPDATV 195
>02_04_0376 - 22474473-22476947
Length = 824
Score = 30.7 bits (66), Expect = 0.78
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 311 RHCLPSMWTIAKFLEAFCSINLLHVAMT 228
R C P++WT ++ FC+ +H AMT
Sbjct: 332 RGCKPNVWTYNALVQGFCNEGKVHKAMT 359
>04_04_0214 -
23674270-23676858,23677574-23680843,23680941-23681119,
23681200-23681559,23681645-23682086,23682199-23682332,
23682479-23682680
Length = 2391
Score = 29.5 bits (63), Expect = 1.8
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = -1
Query: 311 RHCLPSMWT-IAKFL--EAFCSINLLHVAMTSFDVSATDLFSDGTKLVTNLDKI 159
+H SMW ++K L E FC +L+V S + T ++G K V DKI
Sbjct: 186 KHGYMSMWERLSKSLPFEVFCDTQVLNVKRNSCGANVTIKNNNGEKQVLEFDKI 239
>11_03_0127 - 10408628-10409106,10409188-10409821
Length = 370
Score = 28.7 bits (61), Expect = 3.1
Identities = 25/83 (30%), Positives = 35/83 (42%)
Frame = -1
Query: 329 RSPSVTRHCLPSMWTIAKFLEAFCSINLLHVAMTSFDVSATDLFSDGTKLVTNLDKIPPC 150
R P+ RH LP EAF ++ +H A A LF + + V + P C
Sbjct: 54 RFPTRHRHDLPETAMQDAAREAFLRLSSIHRAELVSTEFAHHLFREESNSVCTVQDTPCC 113
Query: 149 VPPNILATLCSPDRRSAMIDDNY 81
P + TL S R + +DD Y
Sbjct: 114 YNP--IVTLLS--RWAEAVDDFY 132
>08_01_0709 +
6265949-6266452,6267697-6267786,6268257-6268402,
6268534-6268710,6268774-6268840,6268949-6269056,
6269718-6269732
Length = 368
Score = 28.7 bits (61), Expect = 3.1
Identities = 23/91 (25%), Positives = 43/91 (47%)
Frame = -1
Query: 308 HCLPSMWTIAKFLEAFCSINLLHVAMTSFDVSATDLFSDGTKLVTNLDKIPPCVPPNILA 129
H LP + A+ SINL + + FDV+ L + T++V + ++ V PN
Sbjct: 211 HGLPHRDVTVRVESAWSSINLYDLLIVLFDVN-RHLKTPDTRVVKLIKRLGAEVNPNQKR 269
Query: 128 TLCSPDRRSAMIDDNYLLLNTSMCLKLIPSH 36
LC + +++D LL + + +P++
Sbjct: 270 ILCM--NKVDLVEDKKDLLKVAKEFEDLPAY 298
>01_02_0104 +
11163634-11163691,11163929-11164193,11165041-11165163,
11165275-11165311,11165320-11165514,11165673-11165792,
11165979-11166173
Length = 330
Score = 28.7 bits (61), Expect = 3.1
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Frame = -1
Query: 359 FGGQ*PSTTRRSPSVTRHCLPSM---WTIAKFLEAFCSINLLHVAMTSFDVSATDLFSDG 189
FGGQ +T P+ + + T + + + + LLH+ S +S+ L +
Sbjct: 74 FGGQTGDSTSVRPAASTRSDRQINLGQTTIRRIRGYHKLKLLHLHTPSLVLSSLQLAAVQ 133
Query: 188 TKLVTNLDKIPPCVPPNI 135
+ +PPC+PP+I
Sbjct: 134 AAAEFPHEPLPPCLPPSI 151
>03_03_0219 -
15519076-15520050,15520376-15520579,15520755-15520791,
15522025-15522104
Length = 431
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +1
Query: 166 SRFVTSLVPSENKSVAETSKE 228
SRFVT+LVPS S AET ++
Sbjct: 189 SRFVTTLVPSVGLSTAETLRK 209
>05_02_0083 +
6450694-6450766,6451391-6451560,6451633-6451704,
6451893-6452043,6452709-6452817,6452906-6453023,
6453214-6453361,6453520-6453768,6454209-6454334,
6454474-6454574,6454728-6454802,6455160-6455219
Length = 483
Score = 27.5 bits (58), Expect = 7.2
Identities = 17/36 (47%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -1
Query: 284 IAKFLEAFCSINLLHVAMTSFDVSATDLFS-DGTKL 180
I F EAFC + L HV V LFS DG KL
Sbjct: 313 IELFAEAFCCLPLAHVINNKVFVVHGGLFSVDGVKL 348
>12_02_0388 -
18486957-18487016,18487286-18489418,18489985-18490484,
18490728-18490899
Length = 954
Score = 27.1 bits (57), Expect = 9.6
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Frame = -1
Query: 479 LEIIVAVTVTNPGWTNGRPISEKSLVAATSTLSNVI*SPMFGGQ*PSTTRRSP-SVTRHC 303
L++I +++TN W P E +V L +I S P+T + S+++ C
Sbjct: 772 LDLISCISLTNISWVQHFPYLEDLIVYNCEKLQQIIGSTSNNDNLPNTDEKERISLSQPC 831
Query: 302 LPSMWTI-AKFLEAFC 258
L I K L C
Sbjct: 832 LKRFTLIYLKSLTTIC 847
>12_02_0333 +
17660454-17660502,17660587-17660704,17661181-17661255,
17661341-17661412,17661606-17661643,17661758-17661791,
17662396-17662519,17663334-17663417,17663991-17664056,
17664110-17664316
Length = 288
Score = 27.1 bits (57), Expect = 9.6
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +1
Query: 277 FAIVHILGKQWRVTDGDLLVVEG-YWPPNIGDQITLDKVLVAATKDFSLIGR 429
F + H LGK+ G+ VEG YW +G + L ++A D S + R
Sbjct: 151 FGLEHALGKRTTADSGEFWHVEGFYWRNPVG-CVDLYSHILATIVDLSYLHR 201
>10_01_0266 +
2816391-2818898,2818934-2819162,2819369-2819444,
2819776-2819830,2822042-2822110,2823077-2823321,
2824029-2824065
Length = 1072
Score = 27.1 bits (57), Expect = 9.6
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -1
Query: 305 CLPSMWTIAKFLEAFCSINLLHVAMTSFD-VSATDLFSDGTKLVTNLDKI 159
C P ++T ++ + CS +LL+ AM D ++ATD + T +D I
Sbjct: 677 CEPDIFTYNIWMHSLCSNHLLNRAMMLLDELAATDCAPNSVTYNTLMDGI 726
>02_03_0121 + 15468894-15468906,15469008-15469193,15474157-15474650,
15475090-15475521,15475597-15475821,15476065-15476346,
15476432-15476704,15477680-15477805,15481010-15481288,
15481313-15481588,15481670-15482113,15482200-15482397,
15482574-15482732,15482832-15483085,15483164-15483316,
15483395-15483683,15483769-15483807,15483913-15483951
Length = 1386
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Frame = -1
Query: 182 LVTNL--DKIPPCVPPNILATLCSP 114
+VTNL D+ PC P +TLC+P
Sbjct: 1236 IVTNLQNDRTTPCGPAETRSTLCAP 1260
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,158,713
Number of Sequences: 37544
Number of extensions: 322606
Number of successful extensions: 910
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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