Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17a12
         (539 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46937-6|CAH10805.1|  171|Caenorhabditis elegans Hypothetical pr...    89   1e-18
Z83241-2|CAB05816.2|  435|Caenorhabditis elegans Hypothetical pr...    30   0.93 
Z49132-6|CAA88985.1|  406|Caenorhabditis elegans Hypothetical pr...    30   1.2  
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l...    30   1.2  
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p...    30   1.2  
Z48543-1|CAA88432.1|  645|Caenorhabditis elegans Hypothetical pr...    28   4.9  
U64842-2|AAB37084.1|  462|Caenorhabditis elegans Hypothetical pr...    28   4.9  
U12787-1|AAA92672.1|  458|Caenorhabditis elegans HMG CoA synthas...    28   4.9  
Z35603-1|CAA84673.1| 1017|Caenorhabditis elegans Hypothetical pr...    27   6.5  
X75564-1|CAA53244.1| 1017|Caenorhabditis elegans myosin IA protein.    27   6.5  

>Z46937-6|CAH10805.1|  171|Caenorhabditis elegans Hypothetical
           protein F43C1.6 protein.
          Length = 171

 Score = 89.4 bits (212), Expect = 1e-18
 Identities = 49/134 (36%), Positives = 78/134 (58%), Gaps = 6/134 (4%)
 Frame = +1

Query: 124 RVANIFGGTQGGILSRFV--TSLVPSENKSVAETS---KEVIATCNKLI-EQNASRNFAI 285
           R A++   +   IL R +   S+  S    V +T    KEV  + +  + E+   R FA+
Sbjct: 5   RCASLLLSSSQSILRRSIQSASVGTSSEAQVIDTEQVQKEVFKSISDEVNEEKRQRLFAV 64

Query: 286 VHILGKQWRVTDGDLLVVEGYWPPNIGDQITLDKVLVAATKDFSLIGRPLVQPGLVTVTA 465
           V++ G+QW+V+DGDL+ +EG  P N+GD+I L+KVL+    +FSL GRPL+    VTV A
Sbjct: 65  VYVNGRQWKVSDGDLINMEGNLPLNVGDEIKLEKVLMVGGTNFSLFGRPLLDASAVTVDA 124

Query: 466 TIISKGLSHTRTHF 507
            ++ K  ++   H+
Sbjct: 125 VVVEKKTTNPELHY 138


>Z83241-2|CAB05816.2|  435|Caenorhabditis elegans Hypothetical
           protein T25C8.1 protein.
          Length = 435

 Score = 30.3 bits (65), Expect = 0.93
 Identities = 17/67 (25%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
 Frame = -1

Query: 290 WTIAKFLEAFCSINLLHVAMTSFDVSATDLFSDGT--KLVTNLDKIPPCVPPNI-LATLC 120
           ++ +K L A C++N  +    +  +++ +++S     +L+  LDK  P +PPN+ +  + 
Sbjct: 282 FSTSKTLVAACAMNGGNALEATLKMNSPEVYSSNRLQELLNQLDKSAPAMPPNLRIDPIF 341

Query: 119 SPDRRSA 99
            P+R S+
Sbjct: 342 IPERGSS 348


>Z49132-6|CAA88985.1|  406|Caenorhabditis elegans Hypothetical
           protein ZK666.6 protein.
          Length = 406

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -1

Query: 506 KWVLVWDNPLEIIVAVTVTNPGWTNGRPISEKSLVAATSTLSNV 375
           K V VWD P  +      +  GW  G PIS+ +L    +  S+V
Sbjct: 320 KGVWVWDQPQGMPQPQLQSYAGWNPGYPISDSTLTGVLNQQSSV 363


>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
           lineage protein 13 protein.
          Length = 2248

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -2

Query: 367 HRCLVASSLRRQGDHHQSRATVYQVCGQLQNFLKH-FVRSIYYM 239
           H C V S      D H  +AT+  V G+L NF ++ F RS+  M
Sbjct: 822 HLCSVISLKTHLSDVHSKQATLELVSGELDNFSENRFDRSLMLM 865


>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
           protein LIN-13 protein.
          Length = 2248

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -2

Query: 367 HRCLVASSLRRQGDHHQSRATVYQVCGQLQNFLKH-FVRSIYYM 239
           H C V S      D H  +AT+  V G+L NF ++ F RS+  M
Sbjct: 822 HLCSVISLKTHLSDVHSKQATLELVSGELDNFSENRFDRSLMLM 865


>Z48543-1|CAA88432.1|  645|Caenorhabditis elegans Hypothetical
           protein C18D1.1 protein.
          Length = 645

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 17/61 (27%), Positives = 31/61 (50%)
 Frame = +1

Query: 148 TQGGILSRFVTSLVPSENKSVAETSKEVIATCNKLIEQNASRNFAIVHILGKQWRVTDGD 327
           T GG  S   +S  PS +  +AET ++ +   ++LI+   + N  +  IL +Q    D +
Sbjct: 35  TSGGSASPTSSSGAPSSSSIMAETDEKDMFMPSQLIQNGLANNQLMSMILQQQSNQADSN 94

Query: 328 L 330
           +
Sbjct: 95  I 95


>U64842-2|AAB37084.1|  462|Caenorhabditis elegans Hypothetical
           protein F25B4.6 protein.
          Length = 462

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 20/62 (32%), Positives = 31/62 (50%)
 Frame = +1

Query: 313 VTDGDLLVVEGYWPPNIGDQITLDKVLVAATKDFSLIGRPLVQPGLVTVTATIISKGLSH 492
           VTD  +  +E Y+P N  DQ  L+K    ++  ++ IG    Q G  +    I+S  L+ 
Sbjct: 11  VTDVGIGAIELYFPQNFVDQNDLEKFNNVSSGKYT-IGLGQQQMGFCSDNEDIVSISLTV 69

Query: 493 TR 498
           TR
Sbjct: 70  TR 71


>U12787-1|AAA92672.1|  458|Caenorhabditis elegans HMG CoA synthase
           protein.
          Length = 458

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 20/62 (32%), Positives = 31/62 (50%)
 Frame = +1

Query: 313 VTDGDLLVVEGYWPPNIGDQITLDKVLVAATKDFSLIGRPLVQPGLVTVTATIISKGLSH 492
           VTD  +  +E Y+P N  DQ  L+K    ++  ++ IG    Q G  +    I+S  L+ 
Sbjct: 7   VTDVGIGAIELYFPQNFVDQNDLEKFNNVSSGKYT-IGLGQQQMGFCSDNEDIVSISLTV 65

Query: 493 TR 498
           TR
Sbjct: 66  TR 67


>Z35603-1|CAA84673.1| 1017|Caenorhabditis elegans Hypothetical
           protein T02C12.1 protein.
          Length = 1017

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 14/59 (23%), Positives = 30/59 (50%)
 Frame = +1

Query: 31  FKWEGINFKHIEVFNNK*LSSIMALLRSGLQRVANIFGGTQGGILSRFVTSLVPSENKS 207
           ++ EGI +  IE FNNK +  ++ + R+G+  + +    + G +  +     +  + KS
Sbjct: 428 YEREGIKWVKIEYFNNKVICDLVEIPRTGILSILDEACASIGNVTDKVFLGELDKKLKS 486


>X75564-1|CAA53244.1| 1017|Caenorhabditis elegans myosin IA protein.
          Length = 1017

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 14/59 (23%), Positives = 30/59 (50%)
 Frame = +1

Query: 31  FKWEGINFKHIEVFNNK*LSSIMALLRSGLQRVANIFGGTQGGILSRFVTSLVPSENKS 207
           ++ EGI +  IE FNNK +  ++ + R+G+  + +    + G +  +     +  + KS
Sbjct: 428 YEREGIKWVKIEYFNNKVICDLVEIPRTGILSILDEACASIGNVTDKVFLGELDKKLKS 486


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,235,652
Number of Sequences: 27780
Number of extensions: 290436
Number of successful extensions: 769
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)