Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17a12
         (539 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   1.5  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   4.6  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   6.1  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   6.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   6.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   8.1  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = -1

Query: 215 SATDLFSDGTKLVTNL-DKIPPCVPPNILATLCSPDRRSAMIDDNY 81
           S  D  SDG   +  + DK+   +   I A   SP  RS M+D  Y
Sbjct: 37  SFMDSNSDGIGDLKGIKDKLSHFIESGITAIWLSPINRSPMVDFGY 82


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
            ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 15/66 (22%), Positives = 27/66 (40%)
 Frame = +1

Query: 226  EVIATCNKLIEQNASRNFAIVHILGKQWRVTDGDLLVVEGYWPPNIGDQITLDKVLVAAT 405
            EVI+  + +++QN  ++   +  +G  +    G     E    P  G   TL +  +   
Sbjct: 819  EVISDFDAILDQNKFKDIIKIKTIGSTYMAASGITESAESEDGPRWGHLSTLVEFALELK 878

Query: 406  KDFSLI 423
            K  S I
Sbjct: 879  KALSSI 884


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +3

Query: 411 LLAYWPPIGPTWI 449
           L+ +W P+ P WI
Sbjct: 498 LIEHWMPLLPNWI 510


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = +1

Query: 328 LLVVEGYWPPNIGDQITLDKVLVAATKDFSLIGRPLVQPGLVTV 459
           L V+  Y P + G+++TL   ++ +   F L+   ++ P  + V
Sbjct: 261 LTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIPPTSLVV 304


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = +1

Query: 328 LLVVEGYWPPNIGDQITLDKVLVAATKDFSLIGRPLVQPGLVTV 459
           L V+  Y P + G+++TL   ++ +   F L+   ++ P  + V
Sbjct: 261 LTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIPPTSLVV 304


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -1

Query: 143 PNILATLCSPDRRSAMIDDNYLLLNTSMC 57
           P +     + + ++A+ D N   LN SMC
Sbjct: 606 PTMYGDALNANLQAALGDSNMGFLNNSMC 634


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,727
Number of Sequences: 438
Number of extensions: 3487
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)