Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17a07
         (337 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    28   0.44 
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma...    27   1.0  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    24   5.4  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    24   7.1  
SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual           23   9.4  
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po...    23   9.4  
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    23   9.4  
SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    23   9.4  
SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomy...    23   9.4  
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    23   9.4  

>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 27.9 bits (59), Expect = 0.44
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 253  LNVFSQNFHIFIFYEQFLDNQGHLNNLRIILLFV 152
            L+ FSQ FH F+     L +  HL  L + LLF+
Sbjct: 1016 LSKFSQKFHGFLILHDNLKDHIHLEELWLNLLFL 1049


>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 630

 Score = 26.6 bits (56), Expect = 1.0
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 265 QWIQLNVFSQNFHIFIFYEQFLDNQGHLNNLRIILLF 155
           Q ++L+     F + +FY+   DN G LNN  +  LF
Sbjct: 297 QIVELSPKGYRFLVDLFYQFDRDNDGALNNEELSALF 333


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +2

Query: 62  ISETSKLTTMCWLGWAVAMSLFSY--IFLSPNHK 157
           +S +   T  C + W    SLF+Y  I +S NH+
Sbjct: 315 VSTSDPYTLACLVSWRDNASLFNYAAIIISFNHQ 348


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = +3

Query: 15   LEKIVSLTKTNEIKKKYLKH 74
            +EK++ L +T+ I+K +L+H
Sbjct: 1681 MEKLLGLVETSIIRKTFLQH 1700


>SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 251 QLYPL*AL*QRIVISLEYCNKKH 319
           Q  PL  L +++ + L  CNKKH
Sbjct: 51  QCAPLNDLTKQVCVELMQCNKKH 73


>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 164 DNSKVIKMSLVI*KLFIKYENVKVLRE 244
           DN KVI +     +LF KY+++ +++E
Sbjct: 17  DNDKVIVVVTKNLELFKKYDDINLIKE 43


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 271 SLQWIQLNVFSQNFHIFIFYEQFLDNQGHLNNLRIIL 161
           SL+  + N+  Q      ++E+ LDNQ  L +LRI L
Sbjct: 639 SLKTSKTNLEEQTQLAEKYHEELLDNQQKLYDLRIEL 675


>SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 204

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 271 SLQWIQLNVFSQNFHIFIFYEQF 203
           +L++I L VFS N +   FY  F
Sbjct: 147 NLKYIFLTVFSANLNALNFYHHF 169


>SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 299

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 259 IQLNVFSQNFHIFIFYEQFLDNQGHLNNLR 170
           I LN+      +FIF EQ +D+   +  LR
Sbjct: 224 IHLNILCVIAQMFIFREQLIDHPSPMTLLR 253


>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 175 LRIILLFVIWRQKYIGEQRHC 113
           L +I+  V W +  IG  RHC
Sbjct: 2   LAVIVAIVRWERAMIGLLRHC 22


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,391,391
Number of Sequences: 5004
Number of extensions: 26048
Number of successful extensions: 58
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)