Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17a06
(617 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|ch... 97 1e-21
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb... 38 0.001
SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|ch... 28 0.94
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca... 27 2.2
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 26 5.0
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 25 6.6
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha... 25 6.6
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 25 6.6
SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy... 25 8.8
SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit S... 25 8.8
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|... 25 8.8
SPAC1D4.03c |aut12||autophagy associated protein Aut12|Schizosac... 25 8.8
SPAC1805.16c |||purine nucleoside phosphorylase |Schizosaccharom... 25 8.8
>SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 341
Score = 97.5 bits (232), Expect = 1e-21
Identities = 50/182 (27%), Positives = 98/182 (53%), Gaps = 1/182 (0%)
Frame = +2
Query: 62 KVSFPAYHSIMIVNRRIISSLFTTTRSYQVTVVGATSEVGQVXXXXXXXXXXITKLVVHD 241
KV+F + + + R S+ T++R+++V V+GA +GQ +++L + D
Sbjct: 4 KVAFKNFTPLKSIAPRSFST--TSSRAFKVAVLGAGGGIGQPLSMLLKLNDKVSELALFD 61
Query: 242 NKEFTPGVTLDLSQIPSPSRILGLTGEDT-LERALKNSDLIIAAGGLSQRPDISEKALLT 418
+ PGV D+ I + S ++G +D LE+AL +D++I G+ ++P ++ L
Sbjct: 62 IRG-APGVAADIGHINTTSNVVGYAPDDKGLEKALNGADVVIIPAGVPRKPGMTRDDLFA 120
Query: 419 ANSQFIKSIISKLGRSCPIPFVGIVTEPINYLIPMTAEIMRNHGVYDEKKLFGITEIDAI 598
N+ ++ + G +CP +VT P+N +P+ + + GV+ K LFG+T +D++
Sbjct: 121 TNASIVRDLAFAAGETCPEAKYLVVTNPVNSTVPIFKKALERVGVHQPKHLFGVTTLDSV 180
Query: 599 RS 604
R+
Sbjct: 181 RA 182
>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 330
Score = 37.9 bits (84), Expect = 0.001
Identities = 37/160 (23%), Positives = 68/160 (42%), Gaps = 1/160 (0%)
Frame = +2
Query: 137 RSYQVTVVGATSEVGQVXXXXXXXXXXITKLVVHD-NKEFTPGVTLDLSQIPSPSRILGL 313
+S ++ +VGA VG ++V+ D NK+ G +DL+ S +
Sbjct: 19 KSIKIVIVGA-GNVGSTTAFTLLLSGLAAEIVIIDLNKKKAEGEAMDLNHAAPLSHETRV 77
Query: 314 TGEDTLERALKNSDLIIAAGGLSQRPDISEKALLTANSQFIKSIISKLGRSCPIPFVGIV 493
D + K++ ++ G +Q+P + LL AN K I+ ++ + + +
Sbjct: 78 YLGDYKD--CKDATAVVITAGKNQKPGETRMDLLKANISIFKEILREVTKYTKDAILLVA 135
Query: 494 TEPINYLIPMTAEIMRNHGVYDEKKLFGITEIDAIRSQCL 613
T P++ L T ++ G E+ + T ID R Q L
Sbjct: 136 TNPVDVLTYATLKLT---GFPAERVIGSGTIIDTARFQYL 172
>SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 411
Score = 28.3 bits (60), Expect = 0.94
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 112 YSSIHYHNAMIRGKTYFEFFEFKRIL 35
Y +HYHN + K +F+ + KR L
Sbjct: 349 YIMLHYHNKPLEHKAFFQKYSSKRFL 374
>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
catalytic subunit Arm1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 811
Score = 27.1 bits (57), Expect = 2.2
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = -1
Query: 431 TGYSLSTELFHLYLDVV 381
TGY S E FHLYLDV+
Sbjct: 151 TGYIDSCEEFHLYLDVL 167
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 25.8 bits (54), Expect = 5.0
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -3
Query: 414 NRAFSLISGRCESPPAAMIKSEFLRARSKVSSPVN 310
N S RC +PP KS+ L S +S PV+
Sbjct: 477 NYRISYGKDRCGNPPRTNSKSDVLSVSSDMSMPVD 511
>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 715
Score = 25.4 bits (53), Expect = 6.6
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Frame = -3
Query: 411 RAFSLISGRCESPPAAMIKSEFLRARSKVSSPVNPNIREGLGICDK---SNVT--PGVNS 247
RA +L + + PP + K + +++ SP+ P +E + + SN+T P VN+
Sbjct: 616 RAVNLSPSKNQKPPKILTKIPDIFSKAGKKSPILPTFQESCSLPIEPFSSNITDLPFVNT 675
Query: 246 LLS*TTNLVIK 214
+ +T+ IK
Sbjct: 676 VTLASTSSKIK 686
>SPAC13G7.04c |mac1||membrane anchored protein Mac1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 756
Score = 25.4 bits (53), Expect = 6.6
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = -3
Query: 357 KSEFLRARSKVSSPVNPNIREGLGIC-DKSNVTPGVNSL 244
KSE +RS V S P + E G C K+ PG SL
Sbjct: 286 KSESSPSRSSVLSTSKPEVHETEGYCPHKTGNRPGFPSL 324
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 25.4 bits (53), Expect = 6.6
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +2
Query: 323 DTLERALKNSDLIIAAGGLSQRPDISEKALLTANSQFIKSIIS 451
+++ AL SD+++ + P I L N QF+++ IS
Sbjct: 670 ESIINALTPSDMLLIKDVVENNPQIRANPSLAINPQFMQNAIS 712
>SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 589
Score = 25.0 bits (52), Expect = 8.8
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -3
Query: 333 SKVSSPVNPNIREGLGICDKSN 268
SKVSSP+NP + +GI ++ N
Sbjct: 127 SKVSSPMNPKHQVHVGIDNEGN 148
>SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit
S28|Schizosaccharomyces pombe|chr 2|||Manual
Length = 288
Score = 25.0 bits (52), Expect = 8.8
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +1
Query: 91 YDSESKNNLVVVHHNKKLPSYGSWRNKRSRSSPESITEIFT 213
++ E+ N+ + +NK+L RN+R SPE ++T
Sbjct: 183 FNIENSNSKTLRLNNKQLAVESFARNERDTGSPEVQAAVYT 223
>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 456
Score = 25.0 bits (52), Expect = 8.8
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +2
Query: 347 NSDLIIAAGGLSQRPDISEKALLTANSQFIKSIISKLGRSCPIPFVGIV 493
N ++ A +RPD+ LLT ++ + I+ K+ S + F G+V
Sbjct: 113 NEKIVSQARESIRRPDVLA-VLLTGRNEGFRGIVEKIIASKGLDFQGVV 160
>SPAC1D4.03c |aut12||autophagy associated protein
Aut12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 25.0 bits (52), Expect = 8.8
Identities = 10/40 (25%), Positives = 22/40 (55%)
Frame = +2
Query: 377 LSQRPDISEKALLTANSQFIKSIISKLGRSCPIPFVGIVT 496
L+ RP+ + L+ +N QF+K + +L +P + ++
Sbjct: 215 LNSRPNFDLRRLIGSNEQFLKELCDQLNDYELVPTLNAIS 254
>SPAC1805.16c |||purine nucleoside phosphorylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 315
Score = 25.0 bits (52), Expect = 8.8
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = -2
Query: 100 HYHNAMIRG---KTYFEFFEFKRILCIILLG*FYWY 2
H+H + + G K YF F KR+ +IL G ++ Y
Sbjct: 72 HFHVSHVPGHASKLYFAFLGEKRVPTMILAGRYHSY 107
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,396,774
Number of Sequences: 5004
Number of extensions: 45077
Number of successful extensions: 113
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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