Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17a06
         (617 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ402957-1|ABD77290.1|  305|Homo sapiens mitochondrial malate de...   104   2e-22
CR536548-1|CAG38785.1|  338|Homo sapiens MDH2 protein.                104   2e-22
BC001917-1|AAH01917.1|  338|Homo sapiens malate dehydrogenase 2,...   104   2e-22
AF047470-1|AAC03787.1|  338|Homo sapiens malate dehydrogenase pr...   104   2e-22
AC005077-1|AAS07425.1|  316|Homo sapiens unknown protein.             104   2e-22
DQ650705-1|ABG25916.1|  372|Homo sapiens T-box 1 protein.              29   9.9  
AF012131-1|AAB94019.1|  372|Homo sapiens brachyury protein.            29   9.9  

>DQ402957-1|ABD77290.1|  305|Homo sapiens mitochondrial malate
           dehydrogenase 2, NAD protein.
          Length = 305

 Score =  104 bits (250), Expect = 2e-22
 Identities = 45/153 (29%), Positives = 85/153 (55%)
 Frame = +2

Query: 146 QVTVVGATSEVGQVXXXXXXXXXXITKLVVHDNKEFTPGVTLDLSQIPSPSRILGLTGED 325
           +V V+GA+  +GQ           +++L ++D    TPGV  DLS I + + + G  G +
Sbjct: 5   KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH-TPGVAADLSHIETKAAVKGYLGPE 63

Query: 326 TLERALKNSDLIIAAGGLSQRPDISEKALLTANSQFIKSIISKLGRSCPIPFVGIVTEPI 505
            L   LK  D+++   G+ ++P ++   L   N+  + ++ +   + CP   + ++  P+
Sbjct: 64  QLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEAMICVIANPV 123

Query: 506 NYLIPMTAEIMRNHGVYDEKKLFGITEIDAIRS 604
           N  IP+TAE+ + HGVY+  K+FG+T +D +R+
Sbjct: 124 NSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRA 156


>CR536548-1|CAG38785.1|  338|Homo sapiens MDH2 protein.
          Length = 338

 Score =  104 bits (250), Expect = 2e-22
 Identities = 45/153 (29%), Positives = 85/153 (55%)
 Frame = +2

Query: 146 QVTVVGATSEVGQVXXXXXXXXXXITKLVVHDNKEFTPGVTLDLSQIPSPSRILGLTGED 325
           +V V+GA+  +GQ           +++L ++D    TPGV  DLS I + + + G  G +
Sbjct: 26  KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH-TPGVAADLSHIETKAAVKGYLGPE 84

Query: 326 TLERALKNSDLIIAAGGLSQRPDISEKALLTANSQFIKSIISKLGRSCPIPFVGIVTEPI 505
            L   LK  D+++   G+ ++P ++   L   N+  + ++ +   + CP   + ++  P+
Sbjct: 85  QLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEAMICVIANPV 144

Query: 506 NYLIPMTAEIMRNHGVYDEKKLFGITEIDAIRS 604
           N  IP+TAE+ + HGVY+  K+FG+T +D +R+
Sbjct: 145 NSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRA 177


>BC001917-1|AAH01917.1|  338|Homo sapiens malate dehydrogenase 2,
           NAD (mitochondrial) protein.
          Length = 338

 Score =  104 bits (250), Expect = 2e-22
 Identities = 45/153 (29%), Positives = 85/153 (55%)
 Frame = +2

Query: 146 QVTVVGATSEVGQVXXXXXXXXXXITKLVVHDNKEFTPGVTLDLSQIPSPSRILGLTGED 325
           +V V+GA+  +GQ           +++L ++D    TPGV  DLS I + + + G  G +
Sbjct: 26  KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH-TPGVAADLSHIETKAAVKGYLGPE 84

Query: 326 TLERALKNSDLIIAAGGLSQRPDISEKALLTANSQFIKSIISKLGRSCPIPFVGIVTEPI 505
            L   LK  D+++   G+ ++P ++   L   N+  + ++ +   + CP   + ++  P+
Sbjct: 85  QLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEAMICVIANPV 144

Query: 506 NYLIPMTAEIMRNHGVYDEKKLFGITEIDAIRS 604
           N  IP+TAE+ + HGVY+  K+FG+T +D +R+
Sbjct: 145 NSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRA 177


>AF047470-1|AAC03787.1|  338|Homo sapiens malate dehydrogenase
           precursor protein.
          Length = 338

 Score =  104 bits (250), Expect = 2e-22
 Identities = 45/153 (29%), Positives = 85/153 (55%)
 Frame = +2

Query: 146 QVTVVGATSEVGQVXXXXXXXXXXITKLVVHDNKEFTPGVTLDLSQIPSPSRILGLTGED 325
           +V V+GA+  +GQ           +++L ++D    TPGV  DLS I + + + G  G +
Sbjct: 26  KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH-TPGVAADLSHIETKAAVKGYLGPE 84

Query: 326 TLERALKNSDLIIAAGGLSQRPDISEKALLTANSQFIKSIISKLGRSCPIPFVGIVTEPI 505
            L   LK  D+++   G+ ++P ++   L   N+  + ++ +   + CP   + ++  P+
Sbjct: 85  QLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEAMICVIANPV 144

Query: 506 NYLIPMTAEIMRNHGVYDEKKLFGITEIDAIRS 604
           N  IP+TAE+ + HGVY+  K+FG+T +D +R+
Sbjct: 145 NSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRA 177


>AC005077-1|AAS07425.1|  316|Homo sapiens unknown protein.
          Length = 316

 Score =  104 bits (250), Expect = 2e-22
 Identities = 45/153 (29%), Positives = 85/153 (55%)
 Frame = +2

Query: 146 QVTVVGATSEVGQVXXXXXXXXXXITKLVVHDNKEFTPGVTLDLSQIPSPSRILGLTGED 325
           +V V+GA+  +GQ           +++L ++D    TPGV  DLS I + + + G  G +
Sbjct: 4   KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH-TPGVAADLSHIETKAAVKGYLGPE 62

Query: 326 TLERALKNSDLIIAAGGLSQRPDISEKALLTANSQFIKSIISKLGRSCPIPFVGIVTEPI 505
            L   LK  D+++   G+ ++P ++   L   N+  + ++ +   + CP   + ++  P+
Sbjct: 63  QLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEAMICVIANPV 122

Query: 506 NYLIPMTAEIMRNHGVYDEKKLFGITEIDAIRS 604
           N  IP+TAE+ + HGVY+  K+FG+T +D +R+
Sbjct: 123 NSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRA 155


>DQ650705-1|ABG25916.1|  372|Homo sapiens T-box 1 protein.
          Length = 372

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -3

Query: 387 RCESPPAAMIKSEFLRARSKVSSPVNPNIREGLGICDKSNVTPGVNSLL 241
           R   P A  + S F R+R+ V+SP  P+  E   + + S + PG+  +L
Sbjct: 305 RNHRPGALPLMSAFARSRNPVASPTQPSGTEKGLVTEGSGLQPGLLDVL 353


>AF012131-1|AAB94019.1|  372|Homo sapiens brachyury protein.
          Length = 372

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -3

Query: 387 RCESPPAAMIKSEFLRARSKVSSPVNPNIREGLGICDKSNVTPGVNSLL 241
           R   P A  + S F R+R+ V+SP  P+  E   + + S + PG+  +L
Sbjct: 305 RNHRPGALPLMSAFARSRNPVASPTQPSGTEKGLVTEGSGLQPGLLDVL 353


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,833,610
Number of Sequences: 237096
Number of extensions: 1389301
Number of successful extensions: 2579
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2579
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6635341780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)