Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17a06
(617 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF002197-5|AAB53985.1| 341|Caenorhabditis elegans Malate dehydr... 105 3e-23
Z68227-18|CAA92521.1| 869|Caenorhabditis elegans Hypothetical p... 32 0.29
Z68220-11|CAA92493.1| 869|Caenorhabditis elegans Hypothetical p... 32 0.29
Z68752-11|CAM82780.1| 324|Caenorhabditis elegans Hypothetical p... 27 8.1
Z68752-10|CAA92986.1| 354|Caenorhabditis elegans Hypothetical p... 27 8.1
U97550-4|AAK18978.2| 773|Caenorhabditis elegans Hypothetical pr... 27 8.1
AL023840-2|CAM82781.1| 324|Caenorhabditis elegans Hypothetical ... 27 8.1
AL023840-1|CAA19510.1| 354|Caenorhabditis elegans Hypothetical ... 27 8.1
>AF002197-5|AAB53985.1| 341|Caenorhabditis elegans Malate
dehydrogenase protein 1 protein.
Length = 341
Score = 105 bits (252), Expect = 3e-23
Identities = 46/159 (28%), Positives = 92/159 (57%)
Frame = +2
Query: 131 TTRSYQVTVVGATSEVGQVXXXXXXXXXXITKLVVHDNKEFTPGVTLDLSQIPSPSRILG 310
++++ +V ++GA +GQ + L ++D TPGV DLS I S +++
Sbjct: 25 SSQAPKVALLGAAGGIGQPLGLLLKQDPLVAHLALYDVVN-TPGVAADLSHIDSNAKVTA 83
Query: 311 LTGEDTLERALKNSDLIIAAGGLSQRPDISEKALLTANSQFIKSIISKLGRSCPIPFVGI 490
TG L A++N+D+I+ G+ ++P ++ L N+ ++ + + + ++ P + I
Sbjct: 84 HTGPKELYAAVENADVIVIPAGVPRKPGMTRDDLFNTNAGIVRDLAAVIAKASPKALIAI 143
Query: 491 VTEPINYLIPMTAEIMRNHGVYDEKKLFGITEIDAIRSQ 607
+T P+N +P+ +E+++ GVYD K++FG+T +D +RSQ
Sbjct: 144 ITNPVNSTVPIASEVLKKAGVYDPKRVFGVTTLDVVRSQ 182
>Z68227-18|CAA92521.1| 869|Caenorhabditis elegans Hypothetical
protein F49C12.15 protein.
Length = 869
Score = 32.3 bits (70), Expect = 0.29
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -3
Query: 354 SEFLRARSKVSSPVNPNIREGLGICDKSNV 265
SE LRARS+ SSP P ++ D+SN+
Sbjct: 722 SERLRARSRASSPATPTLKRTFNQTDESNI 751
>Z68220-11|CAA92493.1| 869|Caenorhabditis elegans Hypothetical
protein F49C12.15 protein.
Length = 869
Score = 32.3 bits (70), Expect = 0.29
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -3
Query: 354 SEFLRARSKVSSPVNPNIREGLGICDKSNV 265
SE LRARS+ SSP P ++ D+SN+
Sbjct: 722 SERLRARSRASSPATPTLKRTFNQTDESNI 751
>Z68752-11|CAM82780.1| 324|Caenorhabditis elegans Hypothetical
protein T12G3.7b protein.
Length = 324
Score = 27.5 bits (58), Expect = 8.1
Identities = 21/70 (30%), Positives = 29/70 (41%)
Frame = -3
Query: 426 LFAVNRAFSLISGRCESPPAAMIKSEFLRARSKVSSPVNPNIREGLGICDKSNVTPGVNS 247
LF V F S + P + E + V P++ N E G + + TP +
Sbjct: 5 LFVVVLLFLATSAAAQEKPEDDVNPEDV---DDVRPPIDENENEKEGKSSEKSTTPPTLT 61
Query: 246 LLS*TTNLVI 217
LLS T NL I
Sbjct: 62 LLSSTANLTI 71
>Z68752-10|CAA92986.1| 354|Caenorhabditis elegans Hypothetical
protein T12G3.7a protein.
Length = 354
Score = 27.5 bits (58), Expect = 8.1
Identities = 21/70 (30%), Positives = 29/70 (41%)
Frame = -3
Query: 426 LFAVNRAFSLISGRCESPPAAMIKSEFLRARSKVSSPVNPNIREGLGICDKSNVTPGVNS 247
LF V F S + P + E + V P++ N E G + + TP +
Sbjct: 35 LFVVVLLFLATSAAAQEKPEDDVNPEDV---DDVRPPIDENENEKEGKSSEKSTTPPTLT 91
Query: 246 LLS*TTNLVI 217
LLS T NL I
Sbjct: 92 LLSSTANLTI 101
>U97550-4|AAK18978.2| 773|Caenorhabditis elegans Hypothetical
protein T20F7.1 protein.
Length = 773
Score = 27.5 bits (58), Expect = 8.1
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = +1
Query: 52 RKIQSKFSRVS*HYDSESKNNLVVVHHNKKLPSYGS---WRNKRSRSS 186
R SKFSR S + SK+ H+ K+PS S +R +R+R S
Sbjct: 362 RLTMSKFSRTSGKTNKFSKSTYYQCQHSGKIPSVKSEKEYRKQRTRVS 409
>AL023840-2|CAM82781.1| 324|Caenorhabditis elegans Hypothetical
protein T12G3.7b protein.
Length = 324
Score = 27.5 bits (58), Expect = 8.1
Identities = 21/70 (30%), Positives = 29/70 (41%)
Frame = -3
Query: 426 LFAVNRAFSLISGRCESPPAAMIKSEFLRARSKVSSPVNPNIREGLGICDKSNVTPGVNS 247
LF V F S + P + E + V P++ N E G + + TP +
Sbjct: 5 LFVVVLLFLATSAAAQEKPEDDVNPEDV---DDVRPPIDENENEKEGKSSEKSTTPPTLT 61
Query: 246 LLS*TTNLVI 217
LLS T NL I
Sbjct: 62 LLSSTANLTI 71
>AL023840-1|CAA19510.1| 354|Caenorhabditis elegans Hypothetical
protein T12G3.7a protein.
Length = 354
Score = 27.5 bits (58), Expect = 8.1
Identities = 21/70 (30%), Positives = 29/70 (41%)
Frame = -3
Query: 426 LFAVNRAFSLISGRCESPPAAMIKSEFLRARSKVSSPVNPNIREGLGICDKSNVTPGVNS 247
LF V F S + P + E + V P++ N E G + + TP +
Sbjct: 35 LFVVVLLFLATSAAAQEKPEDDVNPEDV---DDVRPPIDENENEKEGKSSEKSTTPPTLT 91
Query: 246 LLS*TTNLVI 217
LLS T NL I
Sbjct: 92 LLSSTANLTI 101
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,817,290
Number of Sequences: 27780
Number of extensions: 239458
Number of successful extensions: 628
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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