Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17a05
         (606 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    27   2.8  
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    26   4.9  
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    25   6.5  
SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomy...    25   8.6  

>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 91  TKTKVLCIPSKCSINFRVHINCF 159
           TK      P +C+INF +  +CF
Sbjct: 351 TKLNFFTFPLECAINFHIDCSCF 373


>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +2

Query: 155 VFFFNKNEIKFSYYII*SPLLSEPKDYIRFPFV 253
           + F+N  E +   Y +  PL  + +D +RF F+
Sbjct: 253 IIFYNSTESRDELYDVFQPLAKKYQDTLRFAFL 285


>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 388 LLKNCYIKFIEIMNSPTIAFNCKTLFFNNCIHLLI 492
           LL++C  + +  +N+ TI+    + FF   IH L+
Sbjct: 18  LLRHCAARLVAFVNNTTISKPYFSTFFEGGIHSLL 52


>SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 410

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 104 YYVFRPNVQLILEYILIVFF 163
           YY  +P+VQ+I  + L VFF
Sbjct: 133 YYALKPDVQVIAPWRLPVFF 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,260,743
Number of Sequences: 5004
Number of extensions: 43386
Number of successful extensions: 75
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)