Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17a05
         (606 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U12965-9|AAA20605.3|  522|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AC006769-16|AAF60588.2|  338|Caenorhabditis elegans Serpentine r...    27   7.9  

>U12965-9|AAA20605.3|  522|Caenorhabditis elegans Hypothetical
           protein F23F12.3 protein.
          Length = 522

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -3

Query: 583 MKFDNIVIIYKLPFLI-NFGLFYAAQLVF 500
           M F NI   + L F +  FGLFYA QL+F
Sbjct: 1   MSFLNINRFHILCFFLWQFGLFYACQLIF 29


>AC006769-16|AAF60588.2|  338|Caenorhabditis elegans Serpentine
           receptor, class j protein20 protein.
          Length = 338

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 25/78 (32%), Positives = 37/78 (47%)
 Frame = +2

Query: 17  YLIFNIEHILTYVTSDLNTILVRN*QKQKYYVFRPNVQLILEYILIVFFFNKNEIKFSYY 196
           Y I N+  I  Y+    N I+       K+Y F P   L+L  I ++F  +   +   Y+
Sbjct: 103 YGILNVHFIFRYLALKSNNII-------KFY-FMP-YGLLLSVIYVLFHMSVWAM-IDYF 152

Query: 197 II*SPLLSEPKDYIRFPF 250
            + S   SE +DYIR PF
Sbjct: 153 CLHSA--SEMRDYIRIPF 168


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,218,432
Number of Sequences: 27780
Number of extensions: 231845
Number of successful extensions: 408
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)