Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17a04
         (475 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    28   0.83 
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    26   2.5  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    25   4.5  
SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    25   5.9  

>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 27.9 bits (59), Expect = 0.83
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
 Frame = +2

Query: 32  IYTNIIKRKDLFVCLFRIGSE--TTRPISKILFPLXADIVPD-EHRLHFEIFLNFFFGFM 202
           ++T +       V  + +G+   T  P SK L+ +      D EH +  E   N F    
Sbjct: 350 MFTTVDSTSRAIVNKYSLGNNVSTVNPFSKSLYDIGLHAETDREHTMISEFLTNLFTKLR 409

Query: 203 CVLM 214
           CVLM
Sbjct: 410 CVLM 413


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 140 IVPDEHRLHFEIFLNFFFGF 199
           I PDEH   F+IF N  FG+
Sbjct: 28  IHPDEHLQSFQIFANKLFGW 47


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 356 ECFLKCHFTSHVTVSVSF 303
           +CF  CHF S +++ + F
Sbjct: 874 DCFTSCHFDSDMSIDLKF 891


>SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 526

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 87  PIRNKQTNKSFLFIILV*IPP 25
           P+RNK T+  +LF+    IPP
Sbjct: 292 PLRNKTTSDDYLFLPETDIPP 312


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,709,582
Number of Sequences: 5004
Number of extensions: 29835
Number of successful extensions: 54
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)