Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17a04
         (475 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23529-10|AAK39162.2|  307|Caenorhabditis elegans Hypothetical p...    29   1.3  
AF003386-7|AAB54258.2|  412|Caenorhabditis elegans Hypothetical ...    29   2.3  
Z69883-4|CAA93742.2|  480|Caenorhabditis elegans Hypothetical pr...    27   5.2  
AF100657-3|AAC68961.1|  335|Caenorhabditis elegans Hypothetical ...    27   9.1  

>U23529-10|AAK39162.2|  307|Caenorhabditis elegans Hypothetical
           protein C15B12.6 protein.
          Length = 307

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
 Frame = +2

Query: 14  KXSLGGIYTNIIKRKDLF----VCLFRIGSETTRPISKILFPLXADIVPDEHRLHFEIFL 181
           K   G ++  + K  DLF    VC  +   E T+P SK   P     + D+  + F +  
Sbjct: 231 KDDRGNVFQELEKHYDLFPHIVVCFNKSYIEATKPNSKSKMPQFRKSISDKLNVEFHMNG 290

Query: 182 NFFFGFMCVLM 214
           N      CVLM
Sbjct: 291 NRNLRGRCVLM 301


>AF003386-7|AAB54258.2|  412|Caenorhabditis elegans Hypothetical
           protein F59E12.8 protein.
          Length = 412

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 366 IFLFRPFSPKVWYTI*VTYLFVA 434
           +FLF PFS  VW  + +T L VA
Sbjct: 53  VFLFHPFSTTVWLLLSLTVLVVA 75


>Z69883-4|CAA93742.2|  480|Caenorhabditis elegans Hypothetical
           protein C27C12.5 protein.
          Length = 480

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = -3

Query: 380 PKQKDLTCECFLKCHFTSHVTVSVSFIQ 297
           PK K++ C+C ++C+  ++V   VS ++
Sbjct: 295 PKLKEVPCDCPMQCYSQNYVLQPVSLLK 322


>AF100657-3|AAC68961.1|  335|Caenorhabditis elegans Hypothetical
           protein F52C12.3 protein.
          Length = 335

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -3

Query: 329 SHVTVSVSFIQLER*RCHTIXPNLFNHRLATRPRFA 222
           SH  +    I +E    H   P  F+HRL  RP F+
Sbjct: 251 SHAELRRERITVENVDFHVFSPASFSHRLPARPLFS 286


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,337,636
Number of Sequences: 27780
Number of extensions: 162761
Number of successful extensions: 290
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)