Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17a03
         (374 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0378 - 8146138-8147091                                           26   8.4  
05_04_0117 + 18136189-18137073,18137160-18137516                       26   8.4  

>09_02_0378 - 8146138-8147091
          Length = 317

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +2

Query: 209 QCFTESATGSESRPTEKIRGATQWA*TWSHFKTSFR 316
           QC T++   SE  PT K RG  + A  W  +    R
Sbjct: 55  QCGTKTVKDSEKEPTSKYRGVRRRA--WGKWAAEIR 88


>05_04_0117 + 18136189-18137073,18137160-18137516
          Length = 413

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +2

Query: 248 PTEKIRGATQWA*TWSHFKTSFRYS 322
           PT KIR ++++  +W HF TS R+S
Sbjct: 383 PTPKIRTSSRYKASWYHF-TSARFS 406


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,662,669
Number of Sequences: 37544
Number of extensions: 147680
Number of successful extensions: 229
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)