Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17a03
         (374 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z29560-2|CAA82662.1| 1131|Caenorhabditis elegans Hypothetical pr...    30   0.62 
AF120269-1|AAD13795.1| 1131|Caenorhabditis elegans sex determina...    30   0.62 
U80027-20|AAC48113.2|  400|Caenorhabditis elegans Hypothetical p...    27   4.4  
AF047655-10|AAC04396.1|  335|Caenorhabditis elegans Hypothetical...    27   4.4  
AF026211-2|AAB71294.1|  440|Caenorhabditis elegans Hypothetical ...    27   4.4  

>Z29560-2|CAA82662.1| 1131|Caenorhabditis elegans Hypothetical
           protein K03H1.2 protein.
          Length = 1131

 Score = 29.9 bits (64), Expect = 0.62
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = -3

Query: 198 GKLVSKFSQVEPVSSPTRPDWNSLLGHQRIGS 103
           G LV K  +VE  S PT P   SLLG  R+ S
Sbjct: 18  GGLVIKKKKVEGDSKPTEPSGKSLLGLDRLAS 49


>AF120269-1|AAD13795.1| 1131|Caenorhabditis elegans sex
           determination protein MOG-1 protein.
          Length = 1131

 Score = 29.9 bits (64), Expect = 0.62
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = -3

Query: 198 GKLVSKFSQVEPVSSPTRPDWNSLLGHQRIGS 103
           G LV K  +VE  S PT P   SLLG  R+ S
Sbjct: 18  GGLVIKKKKVEGDSKPTEPSGKSLLGLDRLAS 49


>U80027-20|AAC48113.2|  400|Caenorhabditis elegans Hypothetical
           protein T28A11.2a protein.
          Length = 400

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 331 ETNTITKACLKMTPCLSPLSCSAD 260
           + N   K+C + TPCL  L C  +
Sbjct: 261 DLNKFDKSCTQFTPCLRTLQCGPE 284


>AF047655-10|AAC04396.1|  335|Caenorhabditis elegans Hypothetical
           protein C17B7.2 protein.
          Length = 335

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 331 ETNTITKACLKMTPCLSPLSCSAD 260
           + N   K+C + TPCL  L C  +
Sbjct: 196 DLNKFDKSCTQFTPCLRTLQCGPE 219


>AF026211-2|AAB71294.1|  440|Caenorhabditis elegans Hypothetical
           protein T13B5.3 protein.
          Length = 440

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -2

Query: 97  TGPVRLKSSIYNSKQTFI 44
           TGP +L SS YNSK+ +I
Sbjct: 111 TGPSKLLSSSYNSKEVYI 128


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,527,194
Number of Sequences: 27780
Number of extensions: 129658
Number of successful extensions: 209
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 546325158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)