Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16p15
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    29   0.81 
SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    28   1.1  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    28   1.1  
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|...    27   2.5  
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ...    27   3.3  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    27   3.3  
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2...    26   4.3  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    26   5.7  
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a...    26   5.7  
SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|...    26   5.7  
SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10...    26   5.7  
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce...    26   5.7  
SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomy...    25   7.6  
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    25   7.6  
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    25   10.0 
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   10.0 

>SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 273

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
 Frame = +2

Query: 398 KQKSKGEKQDGTTNKMTPLIGALSVEDLKQ-SNKNSETAKSSPSPERQHGDTKISKQK-P 571
           +QK K  K+D   N+ TP   +  +E      +K+ +++K  P    + G  KI ++   
Sbjct: 49  RQKQKNTKKDTLVNRETPSKKSQKLETSDALKSKSKDSSKKEPVVVPKKGTPKIFQENHK 108

Query: 572 VQPVLKKSPLDMKLNGSH 625
           V+ V  KSP   KL G +
Sbjct: 109 VKKV--KSPKKEKLVGKN 124


>SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 330

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
 Frame = -3

Query: 570 GFCLDIFVSPCCRSGEGLDLAVSEFLLDCFKS----STESAPINGVILFVVPSCF 418
           G C D   +P      GL L + E L+DCF +    +TE   IN +    +PS F
Sbjct: 134 GLCYDS-CTPLANLAVGLSLNIQEVLIDCFATAACFTTEDTSINPIP--TLPSVF 185


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/61 (24%), Positives = 30/61 (49%)
 Frame = +2

Query: 404  KSKGEKQDGTTNKMTPLIGALSVEDLKQSNKNSETAKSSPSPERQHGDTKISKQKPVQPV 583
            K +      TT+ +T    + ++    +S  NSE+A +S + +R    T + +  PV+ V
Sbjct: 980  KPESSLSSSTTSGLTS--SSSTIPSSTRSESNSESASTSSASKRSSSSTSLVQSNPVKTV 1037

Query: 584  L 586
            +
Sbjct: 1038 V 1038


>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 885

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 11/13 (84%), Positives = 12/13 (92%)
 Frame = +3

Query: 552 KYLNKNLFSLFSK 590
           KYLN NLF+LFSK
Sbjct: 624 KYLNPNLFALFSK 636


>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 780

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +2

Query: 311 ICHDCLQQVSTLHLYAVKVEKTQKFLEFHKQKSKGEKQDGTTNKMTPLIGALSVEDLKQS 490
           + + C     T  +  +  +KT  F +F+K   K ++++G   K+   + + + + L  S
Sbjct: 138 VFNSCSPPKPTNPITIIDNDKTHSFKKFYKSLVKEDEENGIEKKINEAMNSSASQPLPNS 197

Query: 491 -NKNSETAKSSP 523
            N  S T  S P
Sbjct: 198 TNFASTTFPSVP 209


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1347

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +2

Query: 455  IGALSVEDLKQSNKNSETAKSSPSPERQHGDTKISKQKPVQPVLKKSPLDM 607
            +G L  E  + ++ N +  ++S  P+R+H   K SK        K  P+D+
Sbjct: 1285 LGILKTE--RDTSTNRKQGQASKQPQRRHRKEKDSKVSESTAEFKSLPIDI 1333


>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
           Byr2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 659

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 455 IGALSVEDLKQSNKNSETAKSSPSPERQHGDTKISKQKP 571
           I  + VE L QSN N +++K +   E  HG+ ++    P
Sbjct: 319 ITMVGVEPLYQSNGNEKSSKYNVFSESAHGNHQVLSFSP 357


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 14/57 (24%), Positives = 26/57 (45%)
 Frame = +2

Query: 398 KQKSKGEKQDGTTNKMTPLIGALSVEDLKQSNKNSETAKSSPSPERQHGDTKISKQK 568
           ++ +KGE +     K +         DLK SN + ET+ S  S   +   ++ +K +
Sbjct: 107 RKHAKGEGKRSKNRKRSSKHSEKQAVDLKSSNSSQETSSSKGSVNNKSERSREAKSR 163


>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 216

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 455 IGALSVEDLKQSNKNSETAK 514
           + A+SV+DLK+ NKN +  K
Sbjct: 81  VDAMSVDDLKKLNKNKKLVK 100


>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 781

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 269 FDITVRADDNLPKAICHDCLQQV 337
           FDI V+   NL  A CH C++ V
Sbjct: 443 FDILVKPQLNLLAAPCHQCVELV 465


>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 455 IGALSVEDLKQSNKNSETAK 514
           + A+SV+DLK+ NKN +  K
Sbjct: 81  VDAMSVDDLKKLNKNKKLVK 100


>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 818

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 16/56 (28%), Positives = 22/56 (39%)
 Frame = +2

Query: 398 KQKSKGEKQDGTTNKMTPLIGALSVEDLKQSNKNSETAKSSPSPERQHGDTKISKQ 565
           K K    K +G  NK+T      S      S +   +     S ER+H D+  S Q
Sbjct: 292 KDKKPSHKSNGRPNKLTAFFNKNSKASSISSAEEHPSNIDDSSIERRHYDSNHSSQ 347


>SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 278

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 5/99 (5%)
 Frame = +2

Query: 320 DCLQQVST-LHLYAVKVEKTQKFLEFHKQKSKGEKQDGTTNKMTPLIGALSVEDLKQSNK 496
           D ++++ T   L     EK    +E  K KSK  K+     K   L    +  + K    
Sbjct: 141 DVIEKLQTSTPLLQYLAEKKNAVVE--KGKSKPSKKSVKAKKKLRLAEKPASNNSKAGKS 198

Query: 497 NSETAKSSPSPERQHG----DTKISKQKPVQPVLKKSPL 601
           + E+ KSS +P         + K+S +K  +   KK+P+
Sbjct: 199 SQESKKSSKAPAESAAAVIKEDKVSDRKKSKKKPKKTPV 237


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = +2

Query: 152 FGNLEKIIVRELSCRLCLCTDVVKLKPLSNEVKRKLK 262
           F ++  ++++ LS ++ LC  ++  +   NEVK  L+
Sbjct: 330 FYDVHSLLLKNLSSKIKLCNHILMYQATFNEVKNFLQ 366


>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
            Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 371  KTQKFLEFHKQKSKGEKQDGTTNKMTPLI 457
            K+  F+EF K+ S     + T  KM PL+
Sbjct: 936  KSNAFVEFGKELSMDRYVEDTDGKMAPLL 964


>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
 Frame = +2

Query: 152 FGNLEKIIVRELSCRLCLCTDVVKL-KPLSNEVKRKLKRLFDITVRADDNL---PKAICH 319
           FG+L+ II+ +L   +    D+V + K L +     LK   D +VRA  +L   P+A+  
Sbjct: 456 FGHLKSIILSQLPAAVFKSPDIVSVKKTLEDARSHLLKDDLDGSVRALLSLSQWPRALSR 515

Query: 320 D 322
           D
Sbjct: 516 D 516


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,650,305
Number of Sequences: 5004
Number of extensions: 53758
Number of successful extensions: 183
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)