Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16p13
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    29   0.83 
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    27   2.5  
SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subu...    27   3.3  
SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subun...    27   3.3  
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    26   4.4  
SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces pombe...    26   5.8  
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    26   5.8  

>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = -3

Query: 671 VGDIELSNFGFG--RCIQELVSRFVTRLEHESENFPGPTMSLDTV 543
           V  I   N GF     +Q LVS       H  E+FP P+ SL ++
Sbjct: 419 VSGINYPNLGFSANNSVQSLVSEIFRHPTHTDEDFPLPSPSLSSL 463


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
 Frame = -3

Query: 242 TGCSTGGMRSSNVFLVSSFARSSLLQHSSLVPR--L*NNILPTLPSITFININKTMKIII 69
           +GCS G +R+++   +S+ + S L   SSL P     N+    LPS   + +N   ++I 
Sbjct: 155 SGCSIGPVRTNHSSSLSNSSNSLLQTESSLRPNSSFVNSPFFPLPSSDDLFLND--RVIN 212

Query: 68  ESKIYQKSLFMLDH-VNQFKSFD 3
               Y+K  ++  H ++  KS D
Sbjct: 213 LFLFYEKFSYLFTHLLSAIKSRD 235


>SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subunit
           Rpn502|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
 Frame = -3

Query: 227 GGMRSSNVFLVSSFARSSLLQHSSLVPRL*NNILPTLPSI----TFININKTMKIIIESK 60
           G  +  N  LVS F +   L+ S  +  L  +++  LP I    T IN+ +T++ I + K
Sbjct: 66  GDFQGLNEQLVSLFKKHGQLKQS--MTSLVQHVMTYLPGIDDLKTKINLIETLRTITDGK 123

Query: 59  IY 54
           IY
Sbjct: 124 IY 125


>SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subunit
           Rpn501|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
 Frame = -3

Query: 227 GGMRSSNVFLVSSFARSSLLQHSSLVPRL*NNILPTLPSI----TFININKTMKIIIESK 60
           G  +  N  LVS F +   L+ S  +  L  +++  LP I    T IN+ +T++ I + K
Sbjct: 66  GDFQGLNEQLVSLFKKHGQLKQS--MTSLVQHVMTYLPGIDDLKTKINLIETLRTITDGK 123

Query: 59  IY 54
           IY
Sbjct: 124 IY 125


>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = -1

Query: 403 ESMVKFHSSNALLLYQVMTVSVCALCRV 320
           +++V + +S+ LLL+ V  + + ALCR+
Sbjct: 19  DNVVVYSASDPLLLFIVQAIIIIALCRL 46


>SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 551

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/62 (24%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
 Frame = +1

Query: 169 SKDDLAKLETRKT----FEDLMPPVLQPVEINSKYINDNLRYFRKAIKYVDNEVEPYRAR 336
           S DD ++LE+ KT       ++ P ++ +EI S   N+N +  ++ +  +  ++E +   
Sbjct: 43  SADDQSELESVKTQLLEMIRVVTPAIELIEIMSVGENENFKSTKQLVDSLHADIEQFTKH 102

Query: 337 IL 342
           +L
Sbjct: 103 VL 104


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1004

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 391  LPSIRFAYYAGYIPYRKARQMEEFFKEIKSYLNTGG 498
            +PS+       YIP R+ +Q + FF +I  +L   G
Sbjct: 924  VPSMTSQSAQSYIPPRRQQQQKGFFAQINDHLAQRG 959


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,801,007
Number of Sequences: 5004
Number of extensions: 60636
Number of successful extensions: 214
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)