Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16p13
         (685 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0434 - 3089300-3089698                                           29   2.6  
11_06_0269 - 21800104-21800655,21800824-21801370,21801398-21801513     29   3.4  
02_04_0428 - 22810672-22811079                                         29   3.4  
01_06_0651 - 30878853-30879150,30879250-30879479                       29   3.4  
12_01_0612 - 5044639-5044858,5045010-5045167,5045440-5045684,504...    29   4.5  
12_02_1228 - 27190983-27191291,27191442-27191675,27191994-271922...    28   7.9  
03_05_0650 - 26423829-26424179,26424379-26424612,26424961-264252...    28   7.9  

>06_01_0434 - 3089300-3089698
          Length = 132

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/66 (27%), Positives = 29/66 (43%)
 Frame = +1

Query: 157 DECWSKDDLAKLETRKTFEDLMPPVLQPVEINSKYINDNLRYFRKAIKYVDNEVEPYRAR 336
           DE   ++ LA ++ R+     +  + + V  N K I  N  Y    I  +DN+  PY A 
Sbjct: 4   DEMRMREKLATMDERQAMAMRLTWISELVASNKKSIAGNKAYILALIDAIDNDRCPYTAA 63

Query: 337 ILKQSL 354
            L   +
Sbjct: 64  ELSDKI 69


>11_06_0269 - 21800104-21800655,21800824-21801370,21801398-21801513
          Length = 404

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/59 (30%), Positives = 32/59 (54%)
 Frame = -3

Query: 212 SNVFLVSSFARSSLLQHSSLVPRL*NNILPTLPSITFININKTMKIIIESKIYQKSLFM 36
           S+ FLV++F+R ++        RL ++I  TLP    +N   ++ III+   Y   ++M
Sbjct: 171 SHCFLVNAFSRETIQLPRPSAFRLSHHICKTLP---IVNTTGSVDIIIQEHEYSGRIYM 226


>02_04_0428 - 22810672-22811079
          Length = 135

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/53 (22%), Positives = 24/53 (45%)
 Frame = -3

Query: 659 ELSNFGFGRCIQELVSRFVTRLEHESENFPGPTMSLDTVKLVQGILRSGSFHP 501
           +LS + +G C +E +S     + ++  N PG    +    + +G     + HP
Sbjct: 83  DLSTYHYGDCFKEQMSLVYDPVSNDYRNLPGVETRVANFGIARGFHSKNTLHP 135


>01_06_0651 - 30878853-30879150,30879250-30879479
          Length = 175

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = +1

Query: 445 RQMEEFFKEIKSYLNTGGLGWKEPERNIPWTNFT-VSKLIVGPGKFSDSCSSLVTKRDTN 621
           R+ E  +K+IKS  +   L   +   +IP  N T ++K      K   SC++L+ + +T 
Sbjct: 104 RKKENPYKKIKSSKSYVALDGNQEACHIPGANSTSIAK------KSGSSCANLMARNNTK 157

Query: 622 SCIHLPNP 645
           S ++ P P
Sbjct: 158 SMLYRPPP 165


>12_01_0612 -
           5044639-5044858,5045010-5045167,5045440-5045684,
           5046006-5046294,5047540-5048561,5049320-5049389
          Length = 667

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/63 (26%), Positives = 35/63 (55%)
 Frame = +1

Query: 199 RKTFEDLMPPVLQPVEINSKYINDNLRYFRKAIKYVDNEVEPYRARILKQSLLDTIGAHL 378
           RKT ++++   ++ +E N+K+ ++ +   RK  +  +NE E    R+L++ L   I   +
Sbjct: 530 RKT-KEMLSECVEQMEFNAKFYHEQIERLRKDTEEKENEFE----RLLQEELARAIECDV 584

Query: 379 RSE 387
            SE
Sbjct: 585 DSE 587


>12_02_1228 -
           27190983-27191291,27191442-27191675,27191994-27192269,
           27192420-27192696,27192985-27193283,27193341-27193454,
           27193909-27194118,27194567-27194699,27194941-27195221
          Length = 710

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
 Frame = +1

Query: 322 PYRARILKQSLLDTIG---AHLRSEILPSIRFAYYAGYIPYRKARQMEEFFKEIKSYLNT 492
           PY   + K  L   +G   + L   ILP +   ++ GYI YR      +     ++  +T
Sbjct: 487 PYHTEVPKVLLFGLLGFTCSVLAPLILPFLLVYFFLGYIVYR-----NQLLNVYRTRYDT 541

Query: 493 GGLGW 507
           GGL W
Sbjct: 542 GGLYW 546


>03_05_0650 -
           26423829-26424179,26424379-26424612,26424961-26425236,
           26425372-26425648,26425751-26425764,26425843-26425989,
           26426306-26426366,26426570-26426604,26426688-26426882,
           26428230-26428439,26428865-26428940,26429519-26429799
          Length = 718

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
 Frame = +1

Query: 322 PYRARILKQSLLDTIG---AHLRSEILPSIRFAYYAGYIPYRKARQMEEFFKEIKSYLNT 492
           PY   + K  L   +G   + L   ILP +   ++ GY+ YR      +F     +  +T
Sbjct: 481 PYHTEVPKVLLFGLLGFTCSVLAPLILPFLLVYFFLGYVVYR-----NQFLNVYCTKYDT 535

Query: 493 GGLGW 507
           GGL W
Sbjct: 536 GGLYW 540


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,295,642
Number of Sequences: 37544
Number of extensions: 329543
Number of successful extensions: 829
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)