Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte16p13
(685 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z72502-1|CAA96585.2| 430|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z82263-1|CAB62792.1| 181|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z73102-3|CAA97409.1| 337|Caenorhabditis elegans Hypothetical pr... 29 4.1
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 28 5.4
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 28 5.4
AL009246-5|CAA15839.1| 357|Caenorhabditis elegans Hypothetical ... 28 5.4
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 28 5.4
Z19152-7|CAA79539.2| 643|Caenorhabditis elegans Hypothetical pr... 28 7.1
AF026206-6|AAK39305.3| 167|Caenorhabditis elegans Hypothetical ... 28 7.1
Z46933-4|CAA87037.1| 452|Caenorhabditis elegans Hypothetical pr... 27 9.4
AL132952-15|CAE46686.1| 103|Caenorhabditis elegans Hypothetical... 27 9.4
AF125442-9|AAD12788.1| 333|Caenorhabditis elegans Hypothetical ... 27 9.4
>Z72502-1|CAA96585.2| 430|Caenorhabditis elegans Hypothetical
protein C08B6.2 protein.
Length = 430
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +1
Query: 232 LQPVEINSKYINDNLRYFRKAIKYVDNEVEPYRARILKQSLLDTIG 369
L+ S D LRYF + Y+ N + AR+L +SLL+ IG
Sbjct: 180 LEKTTNRSNTSKDCLRYFNFMMTYLSNSSKSSFARLLLKSLLEYIG 225
>Z82263-1|CAB62792.1| 181|Caenorhabditis elegans Hypothetical
protein C47A4.1 protein.
Length = 181
Score = 29.1 bits (62), Expect = 3.1
Identities = 21/91 (23%), Positives = 40/91 (43%)
Frame = +1
Query: 343 KQSLLDTIGAHLRSEILPSIRFAYYAGYIPYRKARQMEEFFKEIKSYLNTGGLGWKEPER 522
++S+ DT+ H L R+ + +R A Q EE+ + K YL +G + E
Sbjct: 59 RESIYDTLAWHTIIFPLTIFRYIKWTALWYWRFAIQKEEYDDDAKLYLIRKYIGVSQMEF 118
Query: 523 NIPWTNFTVSKLIVGPGKFSDSCSSLVTKRD 615
+ +T+ + L +C++ +RD
Sbjct: 119 DQKYTDEDIDDLFERECWLKTNCATWKAERD 149
>Z73102-3|CAA97409.1| 337|Caenorhabditis elegans Hypothetical
protein B0035.2 protein.
Length = 337
Score = 28.7 bits (61), Expect = 4.1
Identities = 21/91 (23%), Positives = 40/91 (43%)
Frame = +1
Query: 343 KQSLLDTIGAHLRSEILPSIRFAYYAGYIPYRKARQMEEFFKEIKSYLNTGGLGWKEPER 522
++S+ DT+ H L R+ + +R A Q EE+ + K YL +G + E
Sbjct: 215 RESIYDTLAWHTIIFPLTIFRYIKWTALWYWRFAIQKEEYDDDAKLYLIRKYIGVSQMEF 274
Query: 523 NIPWTNFTVSKLIVGPGKFSDSCSSLVTKRD 615
+ +T+ + L +C++ +RD
Sbjct: 275 DQKYTDEDIDDLFERECWLKRNCATWKAERD 305
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 28.3 bits (60), Expect = 5.4
Identities = 24/111 (21%), Positives = 54/111 (48%), Gaps = 3/111 (2%)
Frame = +1
Query: 190 LETRKTFEDLMPPVLQPVEINSKYINDNLRYFRKAIK--YVDNEVEPYRARILKQ-SLLD 360
+E+ + D + +Q E N K + + L+ ++ + D ++ P+ + +K+ S +
Sbjct: 1083 IESSRVNADEIRKTVQLTENNIKKLENCLKVYKIQGERDLFDEKMRPFHEKAVKEFSTVS 1142
Query: 361 TIGAHLRSEILPSIRFAYYAGYIPYRKARQMEEFFKEIKSYLNTGGLGWKE 513
++ ++++ ++ YYA K MEEFF +I+++ WKE
Sbjct: 1143 SMCGKMKNDWESLVK--YYAFN---DKKYPMEEFFADIRTFSEQYSNAWKE 1188
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 28.3 bits (60), Expect = 5.4
Identities = 24/111 (21%), Positives = 54/111 (48%), Gaps = 3/111 (2%)
Frame = +1
Query: 190 LETRKTFEDLMPPVLQPVEINSKYINDNLRYFRKAIK--YVDNEVEPYRARILKQ-SLLD 360
+E+ + D + +Q E N K + + L+ ++ + D ++ P+ + +K+ S +
Sbjct: 1083 IESSRVNADEIRKTVQLTENNIKKLENCLKVYKIQGERDLFDEKMRPFHEKAVKEFSTVS 1142
Query: 361 TIGAHLRSEILPSIRFAYYAGYIPYRKARQMEEFFKEIKSYLNTGGLGWKE 513
++ ++++ ++ YYA K MEEFF +I+++ WKE
Sbjct: 1143 SMCGKMKNDWESLVK--YYAFN---DKKYPMEEFFADIRTFSEQYSNAWKE 1188
>AL009246-5|CAA15839.1| 357|Caenorhabditis elegans Hypothetical
protein C47F8.6 protein.
Length = 357
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 427 IPYRKARQMEEFFKEIKSYLNTGGLGWKEPERNIPWTNFTVSKL 558
IP R ++ +F +IK N + W + NIP+ NF + L
Sbjct: 297 IPIRDMPKLYKFPHDIKKNDNKDIIAWHNYKNNIPYLNFFMKGL 340
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 28.3 bits (60), Expect = 5.4
Identities = 24/111 (21%), Positives = 54/111 (48%), Gaps = 3/111 (2%)
Frame = +1
Query: 190 LETRKTFEDLMPPVLQPVEINSKYINDNLRYFRKAIK--YVDNEVEPYRARILKQ-SLLD 360
+E+ + D + +Q E N K + + L+ ++ + D ++ P+ + +K+ S +
Sbjct: 666 IESSRVNADEIRKTVQLTENNIKKLENCLKVYKIQGERDLFDEKMRPFHEKAVKEFSTVS 725
Query: 361 TIGAHLRSEILPSIRFAYYAGYIPYRKARQMEEFFKEIKSYLNTGGLGWKE 513
++ ++++ ++ YYA K MEEFF +I+++ WKE
Sbjct: 726 SMCGKMKNDWESLVK--YYAFN---DKKYPMEEFFADIRTFSEQYSNAWKE 771
>Z19152-7|CAA79539.2| 643|Caenorhabditis elegans Hypothetical
protein B0464.6 protein.
Length = 643
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +1
Query: 184 AKLETRKTFEDLMPPVLQPVEINSKYINDNLRYFRKAIKYVDNEVE 321
++ R FED M PV + S+Y+NDN R + I ++ ++
Sbjct: 23 SQASNRSAFEDKMSPVCK-----SRYVNDNQRLEQSRITMLETRIK 63
>AF026206-6|AAK39305.3| 167|Caenorhabditis elegans Hypothetical
protein T28B4.4 protein.
Length = 167
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +1
Query: 67 SMIIFMVLLIFIKVIDGNVGSILFYN 144
S+IIF++LLI I V N+GS +YN
Sbjct: 102 SLIIFILLLISIIVFAANIGS-FYYN 126
>Z46933-4|CAA87037.1| 452|Caenorhabditis elegans Hypothetical
protein F34H10.4 protein.
Length = 452
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/22 (45%), Positives = 18/22 (81%)
Frame = -1
Query: 535 SKEYYVLVLSTLSLQYLSMILF 470
SK Y +++LS+L+ QY++ I+F
Sbjct: 347 SKHYILMILSSLNFQYVTPIVF 368
>AL132952-15|CAE46686.1| 103|Caenorhabditis elegans Hypothetical
protein Y51H4A.25b protein.
Length = 103
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 535 TNFTVSKLIVGPGKFSDSCSSLVTKRDTNSC 627
T + L + G FSD C S TK D +C
Sbjct: 5 TALIIGALSLIAGAFSDDCPSFFTKDDNGTC 35
>AF125442-9|AAD12788.1| 333|Caenorhabditis elegans Hypothetical
protein H04M03.3 protein.
Length = 333
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = +1
Query: 496 GLGWKEPERNIPWTNFTVSKLIVGPGKFSDSCSSLVTKRDTNSCIHLPNPKFDNSISPTT 675
G+ + PE+ W V + G GK++ S L T + S +LPN S+ P T
Sbjct: 195 GIRFFNPEKVTDWQKSLVPTDVSGAGKYAISKIGLATLSTSISQCNLPNIT-ATSVHPGT 253
Query: 676 I 678
+
Sbjct: 254 V 254
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,015,783
Number of Sequences: 27780
Number of extensions: 323228
Number of successful extensions: 1043
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1043
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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