Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16p07
         (582 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   6.7  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   8.9  

>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 411 VSHKTIICGLLRKGSLYTATGS 346
           V H  ++ G+L K +L T+ GS
Sbjct: 91  VEHGELVMGILCKKTLGTSAGS 112


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -2

Query: 368 LCTLQREVV*YLNPSDLTVQLNSRHTTISA-PFLNHKAPYPIFGL 237
           +C+L + +V +L      V   S+  T +A P   H+  Y +FG+
Sbjct: 166 VCSLPQTIVFHLETHP-NVTWYSQCVTFNAFPTYTHEITYSLFGM 209


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,135
Number of Sequences: 438
Number of extensions: 3870
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)