Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte16p03
(725 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subun... 117 1e-27
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol... 31 0.22
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 29 0.89
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 28 1.6
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha... 27 2.7
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 27 3.6
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual 27 3.6
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 26 4.8
SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein |Sch... 26 4.8
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 26 4.8
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 26 6.3
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 26 6.3
>SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subunit
Rpc34|Schizosaccharomyces pombe|chr 3|||Manual
Length = 301
Score = 117 bits (282), Expect = 1e-27
Identities = 55/171 (32%), Positives = 100/171 (58%), Gaps = 1/171 (0%)
Frame = +2
Query: 158 ITDKDIIAEIPGISSV-ELVTALNDLLKQERFDLFNQNGSLIYKLKTQTNKHAIKGADNE 334
++ +D++ I SV +L +ALN LL + D Q L+Y+ + + +
Sbjct: 27 LSQQDLVEAIGASISVNDLSSALNILLSRRLLDPLRQGNVLVYRAVRLDEAKTVSTMEGD 86
Query: 335 EKVVYNLIEEAGNKGIWIRDIRIRSNLANTQLTKVLKNLESKKVIKAVKCVNASKKKVYM 514
E++VY+ I+ +GN+GIW + + +R+NL + + + LK+LESK ++K++K V +K+YM
Sbjct: 87 EQIVYSFIKNSGNEGIWRKTLTLRTNLHVSVVDRCLKSLESKNLVKSIKSVKNPTRKIYM 146
Query: 515 LYNLEPDRSLTGGAWYQDQDFESEFVDVLHVQCHRFLSQRADNMRNNPRGP 667
LY+L P LTGG W+ DQ+ + EF++ L +R++ ++ + GP
Sbjct: 147 LYDLVPSTELTGGPWFTDQELDVEFIENLKKVIYRYVHSKSFPPKKAAMGP 197
>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 797
Score = 30.7 bits (66), Expect = 0.22
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Frame = -2
Query: 448 IFEDFSQLS-----VCKIRTDPNISNPNSFISCFFNQIIDYLFFI 329
IFED S L + DPNI+ P + F N ++DYLF I
Sbjct: 108 IFEDKSMLEWFDYFAWTVPKDPNINTPRG--ASFLNTVVDYLFLI 150
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 28.7 bits (61), Expect = 0.89
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +2
Query: 332 EEKVVYNLIEEAGNKGIWIRDIRIRSNLANTQLTKVLKNLESKKV 466
+E + Y+LIE+A +G+W RD+ + ++ V +L S +
Sbjct: 1760 QEDIFYSLIEDAKTRGVW-RDLSANQFKNSKSISNVSTHLASNNL 1803
>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 312
Score = 27.9 bits (59), Expect = 1.6
Identities = 17/64 (26%), Positives = 28/64 (43%)
Frame = -2
Query: 526 QVVKHINLLFRGINTFHSFYHFFTFQIFEDFSQLSVCKIRTDPNISNPNSFISCFFNQII 347
Q ++ N + G N+ H+ Y T F F+ P +++PN+ I C +
Sbjct: 233 QSIQQTNGFYSGHNSPHTNYSAST-PSFNHFNAAGHPTGNITPTLNSPNNGIHCHSTSAL 291
Query: 346 DYLF 335
D LF
Sbjct: 292 DLLF 295
>SPCC1020.08 |||wybutosine biosynthesis protein
Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 688
Score = 27.1 bits (57), Expect = 2.7
Identities = 13/29 (44%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Frame = -3
Query: 609 CT--WRTSTNSDSKSWSWYQAPPVNDLSG 529
CT WR TN SW W PP L G
Sbjct: 361 CTFCWRHGTNPVGTSWRWKVDPPEMILQG 389
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 26.6 bits (56), Expect = 3.6
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = -2
Query: 688 KLGSSKNRSPRIVSHIISSLTQEPVALYMEDIYKLGFKVL 569
KLG S ++SP VS I+ L +P+ + E I ++ FK +
Sbjct: 1018 KLGLSSSKSPIFVSSILEGL--KPLEVDSEIIQRIRFKAV 1055
>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 26.6 bits (56), Expect = 3.6
Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Frame = +2
Query: 323 ADNEEKVVYNLIEEAGNKGIWIRDIRIRSNLANTQLTKVLKNLESKKVIKAVKCVNASKK 502
ADN+E VV +I+ + + D + +LA + +LK ++ K + + + K
Sbjct: 165 ADNDEAVVLRVIDPSSKLAEDLSDEQSYRSLAEHIMAGILKKVDDDKAVSIIVELVVGKP 224
Query: 503 KVYMLYNL---EPDRSLTG 550
+ +L + PD + G
Sbjct: 225 QDMILRTIHVYSPDSLIVG 243
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 26.2 bits (55), Expect = 4.8
Identities = 17/71 (23%), Positives = 33/71 (46%)
Frame = +2
Query: 371 NKGIWIRDIRIRSNLANTQLTKVLKNLESKKVIKAVKCVNASKKKVYMLYNLEPDRSLTG 550
N I+ +++ + S + + L N ES++ ++ + ++ +LY L P+ L
Sbjct: 253 NAKIFNKELLLNSANHSLEAYMDLINDESRRSTAELQYITTLYERAIVLYPLIPELWLQY 312
Query: 551 GAWYQDQDFES 583
AW DF S
Sbjct: 313 TAWLSKVDFSS 323
>SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 26.2 bits (55), Expect = 4.8
Identities = 18/64 (28%), Positives = 33/64 (51%)
Frame = +2
Query: 281 YKLKTQTNKHAIKGADNEEKVVYNLIEEAGNKGIWIRDIRIRSNLANTQLTKVLKNLESK 460
++L T +N+ IK ++ + N +K I +R ++ SN+A+ Q ++K ESK
Sbjct: 134 FRLLT-SNEEWIKVPESRADIFNNKNLSLASKRIVMRFMKFVSNIADEQNQNLVKEWESK 192
Query: 461 KVIK 472
K
Sbjct: 193 PFYK 196
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 26.2 bits (55), Expect = 4.8
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -2
Query: 403 DPNISNPNSFISCFFNQIIDYLFF 332
DP++S P +SC I ++FF
Sbjct: 282 DPSVSKPQEILSCLSQIPIKFIFF 305
>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 782
Score = 25.8 bits (54), Expect = 6.3
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +2
Query: 116 KEKILNLARKSSKGITDKDIIAEIP 190
K K+ N + SS+G+T +D+ ++P
Sbjct: 615 KSKVFNRFQLSSQGLTPEDLTEDVP 639
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.8 bits (54), Expect = 6.3
Identities = 7/22 (31%), Positives = 17/22 (77%)
Frame = +2
Query: 461 KVIKAVKCVNASKKKVYMLYNL 526
K+IK ++C+ + ++Y+LY++
Sbjct: 755 KLIKLIECMESKSDQIYLLYDV 776
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,759,644
Number of Sequences: 5004
Number of extensions: 54916
Number of successful extensions: 172
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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