Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte16p03
(725 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88178-1|AAC24412.1| 296|Caenorhabditis elegans Hypothetical pr... 125 3e-29
Z93374-5|CAB07557.1| 935|Caenorhabditis elegans Hypothetical pr... 32 0.48
U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel t... 31 0.84
DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-t... 31 0.84
AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-t... 31 0.84
AF067622-2|AAK68367.1| 651|Caenorhabditis elegans Hypothetical ... 28 5.9
Z47745-1|CAA87663.1| 358|Caenorhabditis elegans Hypothetical pr... 28 7.8
>U88178-1|AAC24412.1| 296|Caenorhabditis elegans Hypothetical
protein W09C3.4 protein.
Length = 296
Score = 125 bits (302), Expect = 3e-29
Identities = 66/188 (35%), Positives = 116/188 (61%), Gaps = 1/188 (0%)
Frame = +2
Query: 98 MSSEDTKEKILNLARKSSKGITDKDIIAEIPGISSVELVTALNDLLKQERFDLFNQNGSL 277
+S+ +++ +++ + + + +GI + + PG+ TA+N LL ++ + G +
Sbjct: 9 ISAAESESQVMQIVQAALEGIDMDALTSMTPGLPQTVRQTAINSLLSSKKLAIQQAPGGV 68
Query: 278 IYKLKTQTNKHAIKGADNEEKVVYNLIEEAGNKGIWIRDIRIRSNLANTQLTKVLKNLES 457
+ +LK T++ I G + EE+V+Y+LIEE+ +GIWI+++R S L QL K LK+LE+
Sbjct: 69 L-RLKVNTSEQ-IAGTE-EEQVIYSLIEESKTRGIWIKELREGSGLNQLQLRKTLKSLET 125
Query: 458 KKVIKAVKCVNASKKKVYMLYNLEPDRSLTGGAWYQDQDFESEFVDVLHVQCHRF-LSQR 634
KK+IK +K V + +K Y+L+++EPD SLTGG +Y DQ +SE ++ L C + S+R
Sbjct: 126 KKLIKTIKAVGTT-RKCYILFSIEPDMSLTGGTFYSDQQLDSELINTLISVCGSYAASRR 184
Query: 635 ADNMRNNP 658
+ NP
Sbjct: 185 KHAIDENP 192
>Z93374-5|CAB07557.1| 935|Caenorhabditis elegans Hypothetical
protein C06C6.7 protein.
Length = 935
Score = 31.9 bits (69), Expect = 0.48
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -2
Query: 526 QVVKHINLLFRGINTFHSFYHFFTFQIFEDFSQLS 422
Q KH+ LL R + S + FT ++ DF++LS
Sbjct: 430 QSAKHVKLLLRKVQALESIRNAFTSKVINDFNKLS 464
>U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 2 protein.
Length = 1785
Score = 31.1 bits (67), Expect = 0.84
Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
Frame = -2
Query: 487 NTFHSFYHFFTFQIFEDFSQ-----LSVCKIRTDPN--ISNPNSFISCFFNQIIDYLFFI 329
N + F+ F + D++ LS C + + + N + F+ QI +Y+F +
Sbjct: 909 NKYKQFHDFLAIMTYMDWTMVLVTTLSCCSMLWESPWPTTGENLIFNNFYLQIAEYIFVL 968
Query: 328 ICSFDCVLICLS 293
+ SF+ ++ C++
Sbjct: 969 VMSFELIVKCIA 980
>DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1763
Score = 31.1 bits (67), Expect = 0.84
Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
Frame = -2
Query: 487 NTFHSFYHFFTFQIFEDFSQ-----LSVCKIRTDPN--ISNPNSFISCFFNQIIDYLFFI 329
N + F+ F + D++ LS C + + + N + F+ QI +Y+F +
Sbjct: 887 NKYKQFHDFLAIMTYMDWTMVLVTTLSCCSMLWESPWPTTGENLIFNNFYLQIAEYIFVL 946
Query: 328 ICSFDCVLICLS 293
+ SF+ ++ C++
Sbjct: 947 VMSFELIVKCIA 958
>AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1785
Score = 31.1 bits (67), Expect = 0.84
Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
Frame = -2
Query: 487 NTFHSFYHFFTFQIFEDFSQ-----LSVCKIRTDPN--ISNPNSFISCFFNQIIDYLFFI 329
N + F+ F + D++ LS C + + + N + F+ QI +Y+F +
Sbjct: 909 NKYKQFHDFLAIMTYMDWTMVLVTTLSCCSMLWESPWPTTGENLIFNNFYLQIAEYIFVL 968
Query: 328 ICSFDCVLICLS 293
+ SF+ ++ C++
Sbjct: 969 VMSFELIVKCIA 980
>AF067622-2|AAK68367.1| 651|Caenorhabditis elegans Hypothetical
protein F33E11.3 protein.
Length = 651
Score = 28.3 bits (60), Expect = 5.9
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Frame = +2
Query: 200 SVELVTALNDLLKQERFDLFNQNGSLIYKLKTQTNKHAIKGADNEEKVVYNLIEEAGNKG 379
S A DLL+QE QN L+ +L +HA++ A+ EK L +E
Sbjct: 109 SAAAAAARIDLLEQELRLKLAQNERLVGELAENERQHAVEMAEMSEK----LAKEMRKLE 164
Query: 380 IWIRDIRIRSN---LANTQLTKVLKNLESKK 463
++ +R+R+ +A L L+ +E KK
Sbjct: 165 DEVKRMRMRTKAAAVATKPLEDELEKIEEKK 195
>Z47745-1|CAA87663.1| 358|Caenorhabditis elegans Hypothetical
protein T19H5.2 protein.
Length = 358
Score = 27.9 bits (59), Expect = 7.8
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +2
Query: 95 KMSSEDTKEKILNLARKSSKGITDKDIIAEIPGIS-SVELVTALNDLLKQERF 250
+ S +K+K LNL RKS + + I I G + S +L L DL K RF
Sbjct: 111 QFESAISKQKFLNLNRKSKHINNNVNRILSIGGTNYSEKLSIMLQDLKKTRRF 163
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,809,889
Number of Sequences: 27780
Number of extensions: 292258
Number of successful extensions: 921
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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