Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16o24
         (681 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0024 - 9733994-9734093,9734814-9734870,9734954-9735040,973...    29   2.6  
02_04_0488 + 23397480-23397687,23397777-23397805,23398462-233985...    29   2.6  
02_04_0482 + 23291986-23292181,23292289-23292317,23293500-232936...    29   2.6  
05_03_0676 - 16853937-16854042,16854605-16854700,16854920-168550...    29   4.5  
02_04_0632 + 24614659-24615528,24615636-24616133                       28   7.9  

>10_06_0024 -
           9733994-9734093,9734814-9734870,9734954-9735040,
           9736438-9736982,9737086-9737271
          Length = 324

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 26/74 (35%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = +3

Query: 246 SAGAFLASVTGISALIGFSATLSTAKKSDPKYFSKGLHG--GAELGDAGAILALRALGWG 419
           S  A LASVTG S L G S+ L T      + +  G H   G     A  +LA  A+   
Sbjct: 48  SLAASLASVTGFSLLSGMSSALDTL---CGQAYGAGQHRLLGVYAQRAMLVLAAAAVPIA 104

Query: 420 TLYAVAGTGFLCYG 461
            ++A AG   L +G
Sbjct: 105 LVWASAGEILLLFG 118


>02_04_0488 +
           23397480-23397687,23397777-23397805,23398462-23398564,
           23398811-23398982,23399380-23399440,23399757-23399889,
           23400438-23400709,23400776-23400843,23401096-23401235,
           23401413-23401499,23401580-23402088,23402173-23402990,
           23403024-23403222,23403662-23403817
          Length = 984

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -1

Query: 108 YWAIFHLYLESFFQKFVQQILTFGDSHSTIIHIFI 4
           YW ++ L+ +SF  K V + +  G S S ++H+ +
Sbjct: 308 YWILWTLFNQSFMHKTVFEFIHIGSSVSGMLHLSV 342


>02_04_0482 +
           23291986-23292181,23292289-23292317,23293500-23293602,
           23293855-23293979,23294788-23294920,23295468-23295739,
           23295806-23295873,23296126-23296265,23296443-23296529,
           23296610-23297118,23297203-23298020,23298054-23298252,
           23299084-23299228,23299260-23299314,23301184-23301310,
           23301399-23301468,23301980-23302085,23302168-23302279,
           23302775-23302897,23303000-23303159,23303283-23303359,
           23303457-23303509,23303683-23303737,23304032-23304706
          Length = 1478

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -1

Query: 108 YWAIFHLYLESFFQKFVQQILTFGDSHSTIIHIFI 4
           YW ++ L+ +SF  K V + +  G S S ++H+ +
Sbjct: 268 YWILWTLFNQSFMHKTVFEFIHIGSSVSGMLHLSV 302


>05_03_0676 -
           16853937-16854042,16854605-16854700,16854920-16855089,
           16856742-16856825,16857042-16857119,16858053-16858216,
           16858345-16858429
          Length = 260

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 389 HTCIKSLRMGYTVCCCRYWFPLLWHLETFW 478
           +TCI S+ +G  V  C+YW  +   L++FW
Sbjct: 110 NTCIISVDIGIFVVLCKYW--VAAKLDSFW 137


>02_04_0632 + 24614659-24615528,24615636-24616133
          Length = 455

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = +2

Query: 425 VCCCRYWFPLLWHLET 472
           +CCC  +FP++W + +
Sbjct: 337 ICCCAVFFPIIWSIRS 352


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,829,067
Number of Sequences: 37544
Number of extensions: 311739
Number of successful extensions: 659
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)