Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte16o22
(627 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.01c ||SPBP22H7.10c|conserved fungal protein|Schizosacch... 36 0.006
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 36 0.006
SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|c... 35 0.008
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 33 0.045
SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces... 32 0.078
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 31 0.10
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual 31 0.14
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 31 0.18
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa... 31 0.18
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 30 0.31
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 29 0.42
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p... 29 0.42
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 29 0.55
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po... 29 0.55
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 29 0.55
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 29 0.55
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 29 0.73
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera... 29 0.73
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ... 29 0.73
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 28 0.96
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 28 0.96
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 28 0.96
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 28 1.3
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 28 1.3
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 27 1.7
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo... 27 1.7
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 2.2
SPBC11C11.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 27 2.2
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 27 2.2
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 27 2.2
SPAC3A12.13c |||translation initiation factor eIF3 complex subun... 27 2.2
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 27 2.2
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 27 2.9
SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2 |Sch... 26 3.9
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 26 3.9
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe... 26 3.9
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch... 26 3.9
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces... 26 3.9
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 26 5.1
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 26 5.1
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar... 26 5.1
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz... 25 6.8
SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces... 25 6.8
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc... 25 6.8
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 25 6.8
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 25 9.0
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo... 25 9.0
SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex sub... 25 9.0
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 25 9.0
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|... 25 9.0
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe... 25 9.0
SPBC1347.04 |tim54||TIM22 inner membrane protein import complex ... 25 9.0
>SPBC32H8.01c ||SPBP22H7.10c|conserved fungal
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 35.5 bits (78), Expect = 0.006
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Frame = +2
Query: 296 VCNNFIMEEEPALPSSVIPTLSNTSQKDNNIEGSLEEKN-----TDHPDENSKENRVSIK 460
VC N + + A P SVI +++N N +E E KN T +P E+ +E + +
Sbjct: 50 VCYNHLQDRGFATPISVIKSVTNKID-TNKLEAKDESKNVEKDATGNPQESKQEPNLEV- 107
Query: 461 EQHTEEELAVDTKDVNGDEEN 523
Q TE+E VD+ + N
Sbjct: 108 -QQTEKEKDVDSASAENESIN 127
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 35.5 bits (78), Expect = 0.006
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Frame = +2
Query: 356 LSNTSQKDNNIEGSLEEKNTDHPDENSKENRVSIKEQHTEEELA-VDTKDVNGDEENVDF 532
L++ S+ + D +E+ + ++ E E E+ V+ D DE+NV+
Sbjct: 43 LNDDSEAAKITTNEKQSSPVDSHNESPNDTTINKGEDGNENEVDNVNNNDKKEDEDNVE- 101
Query: 533 KLTGDNEEVLEATEAEGKGEKDEEQIKEE 619
+NEE +A E E + E+D+E+ +E+
Sbjct: 102 ----ENEEEADANEEEEEDEEDDEEDEED 126
Score = 26.6 bits (56), Expect = 2.9
Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
Frame = +2
Query: 353 TLSNTSQKDNNIEGSLEEKNTDHPDENSKENRVSIKEQHTEEELAVDTKDVNGDEENVDF 532
T++ + N ++ + ++N +EN EEE D +D DEE+ D
Sbjct: 73 TINKGEDGNENEVDNVNNNDKKEDEDNVEENEEEADANEEEEE---DEEDDEEDEEDEDE 129
Query: 533 KLTGDNEEVL-----EATEAEGKGEKDEEQIKEE 619
G + + + E + ++DEE++++E
Sbjct: 130 SGGGRRKRARHDRRNQFLDIEAEVDEDEEELEDE 163
>SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 449
Score = 35.1 bits (77), Expect = 0.008
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 18/120 (15%)
Frame = +2
Query: 317 EEEPALPSSVIPTLSNTSQKDN----NIEGSLEEKNTDHPDENSKENRVSIKEQHTEEEL 484
EEE PS + +SN QKD IE S EE ++H S ++ +E+ EEL
Sbjct: 68 EEENGKPSQISAFISNGHQKDTLENPAIESSYEE--SEHARNVSDSESITSQEEEEYEEL 125
Query: 485 AVDTKD----------VNGDEENV-DFKLTGDNEEVLE---ATEAEGKGEKDEEQIKEEN 622
+D D V+G+E ++ + K T ++ +++ EA +GE +EEN
Sbjct: 126 EIDDADRDLFDRFLPTVSGEEGDLTEEKTTSLSDLIMQKINEAEARARGEYIPSAEEEEN 185
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 32.7 bits (71), Expect = 0.045
Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Frame = +2
Query: 320 EEPALPSSVIPTLSNTSQKDNNIE---GSLEEKNTDHPDENSKENRVSIKEQHTEEELAV 490
EE L SS + ++S ++ + E S E + + S+E+ V + ++
Sbjct: 21 EENRLTSSRLKKQDDSSSEEESSEEESASSSESESSEEESESEESEVEVPKKKAVAASED 80
Query: 491 DTKDVNGDEENVDFKLTGDNEEVLEA-TEAEGKGEKDEEQIKEE 619
D EE + + D+E E+ +E+E + E +EE EE
Sbjct: 81 SESDSESSEEEEETESEEDSEVSDESESESESESESEEESESEE 124
>SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 31.9 bits (69), Expect = 0.078
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +2
Query: 362 NTSQKDNNIEGSLEEKNTDHPDENSKENRVSIKEQHTEEELA 487
++S+ D+ E S+E K T++ DE+ K V I E +EE+A
Sbjct: 105 SSSKSDSEEESSMEPKTTEY-DEDDKHVTVEIVEDDDDEEIA 145
Score = 25.0 bits (52), Expect = 9.0
Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = +2
Query: 425 DENSKENRVSIKEQHTEEELAVD--TKDVNGDEENVDFKLTGDNEEVLEATEAEG 583
DE S + S + +EEE +++ T + + D+++V ++ D+++ A EG
Sbjct: 96 DEESSQQEDSSSKSDSEEESSMEPKTTEYDEDDKHVTVEIVEDDDDEEIAYPKEG 150
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 31.5 bits (68), Expect = 0.10
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = +2
Query: 320 EEPALPSSVIPTLSNTSQKDNNIEGSLEEKNTDHPDENSKENRVSIKEQHTEEELAVDTK 499
+E PS+ PTL + S +++ S + + T D V+ E +E+E A
Sbjct: 366 DEDDQPSADSPTLMHPSDLISSLVNS-QNQTTSVSDNTGPNENVNEAEHISEDEQASTAT 424
Query: 500 DVNGDEEN 523
DVNG +N
Sbjct: 425 DVNGISDN 432
>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 578
Score = 31.1 bits (67), Expect = 0.14
Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +2
Query: 203 IIILRKNFRKPRCCDNYLV*NRITSNSVKILVCNNFIMEEEPALPS-SVIPTLSNTSQKD 379
+I++ K + K RC ++ +TS ++ +V N + P LPS ++P L ++S
Sbjct: 192 LIVMIKYWAKRRCLNDAAEGGTLTSYTISCMVINFLQKRDPPILPSLQMLPHLQDSSTMT 251
Query: 380 NNIEGS 397
+ ++ S
Sbjct: 252 DGLDVS 257
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 30.7 bits (66), Expect = 0.18
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = +2
Query: 395 SLEEKNTDHPDENSKENRVSIKEQHTEEELAVDTKDVNGDEENVDFKLTGDNEEVLE-AT 571
+L E +D ++S VS KE+ ++ LA + DE+ ++ L D+ E
Sbjct: 10 ALVETPSDLNAQDSDSLSVSTKEELGDDALAAEEGQSVLDEQEIEEALEEDDTNYEEDII 69
Query: 572 EAEGKGEKDEEQIKEENK 625
+ E + DEE+++EE +
Sbjct: 70 DDEESAQVDEEELEEEEE 87
>SPBC1685.08 |||histone deacetylase complex subunit
Cti6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 424
Score = 30.7 bits (66), Expect = 0.18
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +2
Query: 371 QKDNNIEGSLEEKNTDHPDENSKENRVSIKEQHTEEELAVDTKDVNGDEENVDFK 535
+ D +E S E K D +EN + + ++ E EE VDT + DEE K
Sbjct: 211 ENDEILEDSKESK--DENEENKETSTTNVAETDAPEEETVDTVEEIADEEKHSVK 263
Score = 25.0 bits (52), Expect = 9.0
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 509 GDEENVDFKLTGDNEEVLEATEAEGKGEKDEEQ 607
G E N+ K+ +N+E+LE ++ E K E +E +
Sbjct: 199 GTEINLKQKIEEENDEILEDSK-ESKDENEENK 230
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1778
Score = 29.9 bits (64), Expect = 0.31
Identities = 22/93 (23%), Positives = 36/93 (38%)
Frame = +2
Query: 314 MEEEPALPSSVIPTLSNTSQKDNNIEGSLEEKNTDHPDENSKENRVSIKEQHTEEELAVD 493
M ++ L S +S D+N + E + + D SKEN V + E
Sbjct: 1012 MSKKVKLDFSSDSNVSERGDYDDNAKKVDEVISIEKVDGYSKENNVPLSEDDLSNSSESS 1071
Query: 494 TKDVNGDEENVDFKLTGDNEEVLEATEAEGKGE 592
+ V E D L DN ++ + +E + E
Sbjct: 1072 NESVYSLVEESDASLAADNMDIEDISEESDREE 1104
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 29.5 bits (63), Expect = 0.42
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 9/78 (11%)
Frame = +2
Query: 326 PALPSSVIPTLSN--TSQKDNNIEGSLEEKNTDHPDENSKEN-RVS---IKEQHTEEELA 487
P P L N SQKD N SL+ D +K+N R I E+ ++ LA
Sbjct: 475 PGTPKITFGKLKNHSQSQKDYNSSTSLDSSEESEVDVENKQNVRTKYDRIFERKNQDVLA 534
Query: 488 VDTK---DVNGDEENVDF 532
+ +VN DE++ DF
Sbjct: 535 AHRQRLVEVNSDEDDGDF 552
>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 29.5 bits (63), Expect = 0.42
Identities = 22/64 (34%), Positives = 32/64 (50%)
Frame = +2
Query: 425 DENSKENRVSIKEQHTEEELAVDTKDVNGDEENVDFKLTGDNEEVLEATEAEGKGEKDEE 604
D+N +EN ++ KE E+ VD D EE+V+ D E E TE + ++ EE
Sbjct: 33 DKNPEENVMNEKED--ED---VDAVDEKSGEEDVEMDTMEDENENDEDTEQTSEKKETEE 87
Query: 605 QIKE 616
KE
Sbjct: 88 TPKE 91
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1389
Score = 29.1 bits (62), Expect = 0.55
Identities = 13/45 (28%), Positives = 28/45 (62%)
Frame = +2
Query: 437 KENRVSIKEQHTEEELAVDTKDVNGDEENVDFKLTGDNEEVLEAT 571
KE+ + +++ + ELA +TK+ + E +VD K + E+++ +T
Sbjct: 317 KEHPIQLEDSNNSAELAKETKEEDDSENSVDKK--ENEEDIISST 359
>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 29.1 bits (62), Expect = 0.55
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = +2
Query: 425 DENSKENRVSIKEQHTEEELAVDTKDVNGDEENVDFKLTGDNEEVLEATEAEGKGEKDEE 604
DE +E E+ +EE D ++ D+ + D + GD E E +GKG ++EE
Sbjct: 175 DEEEEEEEADEMEEEFDEEGEGDEEEEEEDDGDGDGEGDGDGE-----GENDGKGSEEEE 229
Query: 605 Q 607
+
Sbjct: 230 E 230
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 29.1 bits (62), Expect = 0.55
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Frame = +2
Query: 311 IMEEEPALPSSVIPTLSNTSQK--DNNIEGSLEEKNTDHPDENSKENRVSIKEQHTEEEL 484
++ E+P S+ LS S++ +++ S E K+T+ P E V + E
Sbjct: 221 MLNEDPEYDSAEEDYLSTDSEEFSEDSDNSSEENKDTNEPSTKDAEKTVPEDVVNLRSEQ 280
Query: 485 AVDTKDVNGDEENVDFKL-TGDNEEVLEATE 574
+ + + EN DF L T +++ +ATE
Sbjct: 281 KLQPSFGHPEFENEDFDLETSEDDSSDDATE 311
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 29.1 bits (62), Expect = 0.55
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Frame = +2
Query: 431 NSKE-NRVSIKEQHTEEELAVDTKDVNGDEENVDFKLTGD---NEEVLEATEAEGKGEKD 598
N K+ N S+ +EE+++ K + E N K + + ++L TE K EKD
Sbjct: 164 NKKDKNTSSVTTLTSEEDVSYFQKKLTNMESNFSAKQSEAYDLSRQLLTVTEKLDKKEKD 223
Query: 599 EEQIKEE 619
E+IKE+
Sbjct: 224 YEKIKED 230
Score = 27.5 bits (58), Expect = 1.7
Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Frame = +2
Query: 341 SVIPTLSNTSQKDNNIE---GSLEEKNTDHPDENSKENRVSIKEQHTEEELAVDTKDVNG 511
++ L +TS K ++ + E+K + DEN+ +K + + + L +DV+
Sbjct: 627 TITKQLKDTSSKLQQLQLERANFEQKESTLSDENNDLRTKLLKLEESNKSLIKKQEDVDS 686
Query: 512 DEENVDFKLTGD---NEEVLEATEAEGKGEKD 598
E+N+ L D +EE L ++ E K ++
Sbjct: 687 LEKNIQ-TLKEDLRKSEEALRFSKLEAKNLRE 717
Score = 26.2 bits (55), Expect = 3.9
Identities = 18/94 (19%), Positives = 42/94 (44%)
Frame = +2
Query: 338 SSVIPTLSNTSQKDNNIEGSLEEKNTDHPDENSKENRVSIKEQHTEEELAVDTKDVNGDE 517
SS+ + ++ +E + + D +SK ++ ++ + E++ + D N D
Sbjct: 605 SSLDTSFKKLNESHQELENNHQTITKQLKDTSSKLQQLQLERANFEQKEST-LSDENNDL 663
Query: 518 ENVDFKLTGDNEEVLEATEAEGKGEKDEEQIKEE 619
KL N+ +++ E EK+ + +KE+
Sbjct: 664 RTKLLKLEESNKSLIKKQEDVDSLEKNIQTLKED 697
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 28.7 bits (61), Expect = 0.73
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Frame = +2
Query: 26 VKTNYYCPRLFLCVFMLLNFETYVLQKSIRK---EMFAEFIDILDFILIESNSL 178
++ NY+ P++F C+F LL T+ + S + E+ +IL+F + S SL
Sbjct: 970 IEQNYFEPQMFACIFPLLYDLTFNITNSDEEDEAELQLLVTEILEFQALYSASL 1023
>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
isomerase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 361
Score = 28.7 bits (61), Expect = 0.73
Identities = 15/52 (28%), Positives = 31/52 (59%)
Frame = +2
Query: 455 IKEQHTEEELAVDTKDVNGDEENVDFKLTGDNEEVLEATEAEGKGEKDEEQI 610
+ E+ EEE + + D++ EE++ ++GD EE E +E+E +E+++
Sbjct: 123 VDEEDEEEEESDEDYDLSPTEEDLVETVSGD-EESEEESESEDNSASEEDEL 173
>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 878
Score = 28.7 bits (61), Expect = 0.73
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +2
Query: 281 SVKILVCNNFIMEEEPALPSSVIPTLSNTSQKDNNIEGSLEEKNTDHP-DENSKE 442
SV I N+ +++ A+ S VI T + +KDN +E ++ + HP N KE
Sbjct: 314 SVSIPDINSLSLKDYSAVVSRVISTDTLEVRKDNGVECRIQLSSIRHPRPSNEKE 368
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 28.3 bits (60), Expect = 0.96
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = +2
Query: 332 LPSSVIPTLSNTS---QKDNNIEGSLEEKNTDHPDENSKENRVSIKEQ 466
LPS V+PT SN+S Q N+ ++ + D+ S N + Q
Sbjct: 465 LPSPVVPTRSNSSSILQPSYNLNSHSSDRRNTNDDDQSSLNSQQLSNQ 512
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 28.3 bits (60), Expect = 0.96
Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 3/107 (2%)
Frame = +2
Query: 302 NNFIMEEEPALPSSVIPTLSNTSQKDNNIEGSLEEKNTDHPDENSKENRVSIKEQHTEEE 481
+ F +EE SV T S +++N +EE N+D D E + K +E
Sbjct: 144 DEFSSDEEEMDDISV--TSSEEEEEENGAR--IEELNSDEEDAEQAEEEILEKPVPKDEV 199
Query: 482 LAVDTKDVNGDEENVDFKLTGDNEEV---LEATEAEGKGEKDEEQIK 613
+KD EE ++ V TE G+GE+ E++ K
Sbjct: 200 AEKHSKDKLKKEEKEKKTAVDVSDSVNGKKRKTEPAGEGEQTEKKSK 246
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 28.3 bits (60), Expect = 0.96
Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 12/101 (11%)
Frame = +2
Query: 338 SSVIPTLSNTSQKDNNIEGSLEEKNTDHPDENSKENRVSIKEQHTEEELAVDTKDVNGDE 517
+S + SN+ D S E N ++ +E E+E A D DVN +
Sbjct: 386 NSGLQLFSNSDAIDTVDRESSEIDNVGRKTRRQPTGLIN-QELIKEDEGAFDDSDVNSAD 444
Query: 518 ENVDFKLTG-----------DNEEVLEA-TEAEGKGEKDEE 604
EN D TG DNEEV A ++++ G+ D+E
Sbjct: 445 ENEDVDFTGKIGAINNEDESDNEEVAFADSDSDLGGQFDDE 485
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 27.9 bits (59), Expect = 1.3
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Frame = +2
Query: 389 EGSLEEKNTDHPDENSKENRVS-IK-EQHTEEELAVDTKDVNGDEENVDFKLTGDNEEVL 562
+ L+ K +E KE R +K ++ EEL D D +EEN D D +
Sbjct: 3 KSELKRKKHQSGNEEVKEKRQKPLKNDKKIAEELPQDEDDYEQEEENED----ADQNTSV 58
Query: 563 EATEAEGKGEKDEEQIKE 616
E+ E E ++E++++
Sbjct: 59 ESESEELDNENEDERVQK 76
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 27.9 bits (59), Expect = 1.3
Identities = 23/92 (25%), Positives = 43/92 (46%)
Frame = +2
Query: 344 VIPTLSNTSQKDNNIEGSLEEKNTDHPDENSKENRVSIKEQHTEEELAVDTKDVNGDEEN 523
V+ S+ SQ + E + E + ENSK+ + S + +DT + + +
Sbjct: 1293 VLTNESSLSQTEIPEEKTENETTAVNGFENSKKRQFSSLLSGS-----IDTNNESNKVSS 1347
Query: 524 VDFKLTGDNEEVLEATEAEGKGEKDEEQIKEE 619
V+F +G + + TEA + EK+ + +K E
Sbjct: 1348 VEFDKSGPQDIIQSMTEATFEIEKNIQDLKSE 1379
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 27.5 bits (58), Expect = 1.7
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +2
Query: 353 TLSNTSQKDNNIEGSLEEKNTDHPDENSK--ENRVSIKEQHTEEEL 484
+L SQ +N+++ + EKN + NSK E R ++ + E E+
Sbjct: 537 SLETLSQTNNSLQCEISEKNAELNSVNSKLSEGRAHLETANKENEI 582
>SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 860
Score = 27.5 bits (58), Expect = 1.7
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Frame = +2
Query: 359 SNTSQKDNNIEGSLEEKNTDHPDENSKENRVSIKEQHTEEELAVDTKDVNGDEENV-DFK 535
S S +N+ E E+ DE EN I H+E+E DT D DE ++ F
Sbjct: 762 SEQSADENDNESMASEEKPMFSDE---ENLSEIA--HSEDEFD-DTVDFFEDENDLLPFN 815
Query: 536 LTGDNEEV--LEATEAEGKGEKDEEQIKE 616
T D EE+ ++ +E +K + IK+
Sbjct: 816 ETDDEEEIQTVDHSETHSHKKKKRKAIKD 844
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 27.1 bits (57), Expect = 2.2
Identities = 17/69 (24%), Positives = 27/69 (39%)
Frame = +2
Query: 383 NIEGSLEEKNTDHPDENSKENRVSIKEQHTEEELAVDTKDVNGDEENVDFKLTGDNEEVL 562
N E + + +D E + + H + + DEEN D + G+NEE+
Sbjct: 4172 NEESTEDGVKSDEELEQGEVPEDQAIDNHPKMDAKSTFASAEADEENTDKGIVGENEELG 4231
Query: 563 EATEAEGKG 589
E A G
Sbjct: 4232 EEDGAAESG 4240
>SPBC11C11.06c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 178
Score = 27.1 bits (57), Expect = 2.2
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Frame = +2
Query: 368 SQKDNNIEGSLEEKNTDH-PDENSKENRV----SIKEQHTEEELAVDTKDVNGDEENVDF 532
S K+ + S E +H P++ + E ++E +EE + K V DEE+ D
Sbjct: 2 SAKEGSSHPSYAEIVREHAPEQTAAEKAAPQPPEVEEVLSEEPYQKNEKVVVLDEEDADA 61
Query: 533 KLTGDNEEVLEATEAEGKGEK--DEEQIKEENK 625
L + E + +E GEK E++++E K
Sbjct: 62 FLHPEEAEAKKESEKPSDGEKKGKTEKLEKEAK 94
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 27.1 bits (57), Expect = 2.2
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Frame = +2
Query: 425 DENSKENRVSIKEQHTEEELAVDTKDVNG-DEENVDFKLTG-DNEEVLEAT---EAEGKG 589
DE + +R IKE+ EEE++V ++ D+EN D L N+++ +A+ +AE
Sbjct: 250 DEWLRLHRTRIKEKQPEEEVSVVGDELKSFDKENNDEHLERVTNDKIADASMLQKAENNV 309
Query: 590 EKDEEQIK 613
+ E I+
Sbjct: 310 SEQERNIQ 317
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 27.1 bits (57), Expect = 2.2
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = +2
Query: 302 NNFIMEEEPALPSSVIPTLSNTSQKDNNIEGS--LEEKNTDHPDENSKENRVSIKEQHTE 475
NN S + L ++ K+ E S +E + D+ E + +N + K HTE
Sbjct: 60 NNIANSSSQQSVSEIDIQLPSSEPKEGVKEESNLIESNSLDNVQEINPQNTIGDKSAHTE 119
Query: 476 EELAVD 493
EE + D
Sbjct: 120 EESSND 125
>SPAC3A12.13c |||translation initiation factor eIF3 complex
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 274
Score = 27.1 bits (57), Expect = 2.2
Identities = 26/104 (25%), Positives = 53/104 (50%), Gaps = 5/104 (4%)
Frame = +2
Query: 320 EEPALPSSVIPTLSNTSQKDNNIEGSLEEKNTDHPDENSKENRVSIK-EQHT-EEELAVD 493
E+PA P+ L KD+ +++ D DE+ +EN+ S++ + H+ ++ +
Sbjct: 10 EDPAKPAEFDFPLG----KDSQSSSKPKKRFDDEEDEDEEENKESLQNDSHSVSQKSSSS 65
Query: 494 TKDVNGDEE--NVDFKLTGDN-EEVLEATEAEGKGEKDEEQIKE 616
+++ G + + K+ N E+ ++A+EA K E+ E KE
Sbjct: 66 SQNDQGSNKMTRIQQKIQERNFEKAIKASEAAAK-EESLESSKE 108
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 27.1 bits (57), Expect = 2.2
Identities = 23/93 (24%), Positives = 43/93 (46%)
Frame = +2
Query: 341 SVIPTLSNTSQKDNNIEGSLEEKNTDHPDENSKENRVSIKEQHTEEELAVDTKDVNGDEE 520
+++ ++SQ +N+E ++ EKN + + N K R + ++ ++ + DTK EE
Sbjct: 976 NIMADYQHSSQHLSNLEKAINEKNLNIRELNEKLMR--LDDELLLKQRSYDTKVQELREE 1033
Query: 521 NVDFKLTGDNEEVLEATEAEGKGEKDEEQIKEE 619
N K E A+ E + E K+E
Sbjct: 1034 NASLKDQCRTYESQLASLVSKYSETESELNKKE 1066
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 26.6 bits (56), Expect = 2.9
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Frame = +2
Query: 389 EGSLEEKNTDHPDENSKEN---RVSIKEQHTEEELAVDTKDVNGDEENVDFKLTGDNEEV 559
E +EE + D +KE V KE+ T+ + D + ++ + DN+E
Sbjct: 481 EDKVEETESKEADVKAKETDSIEVDDKEEKTDSKETADKVEQTDSKDTNEKPAKDDNKEA 540
Query: 560 LEATEAEGKGEKD-EEQIKE 616
E +AE KD +E+I+E
Sbjct: 541 NE--KAEKVDSKDVKEKIEE 558
>SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 437
Score = 26.2 bits (55), Expect = 3.9
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +2
Query: 512 DEENVDFKLTGDNEEVLEATEAEGKGEKDEEQIKEEN 622
D+EN DF+ D+++++E + + +KEEN
Sbjct: 9 DDENYDFEFEDDDDDMIEPYVDVENCYYNSKSLKEEN 45
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 26.2 bits (55), Expect = 3.9
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 497 KDVNGDEENVDFKLTGDNEEVLEATEAEGKGEKDEEQIKEE 619
K V N L G ++EA + G GEKD+E ++EE
Sbjct: 642 KIVEQGSHNELLDLNGAYARLVEAQKLSG-GEKDQEMVEEE 681
>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 520
Score = 26.2 bits (55), Expect = 3.9
Identities = 13/55 (23%), Positives = 26/55 (47%)
Frame = +2
Query: 428 ENSKENRVSIKEQHTEEELAVDTKDVNGDEENVDFKLTGDNEEVLEATEAEGKGE 592
EN + ++ + QH E + + DT++ E+ T D +E+ + +GE
Sbjct: 92 ENDLDEKLVLDGQHVEGDHSSDTEEEVVSEDQKQLNKTDDESTFIESHQIYIQGE 146
>SPBC4F6.09 |str1||siderophore-iron transporter Str1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 26.2 bits (55), Expect = 3.9
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +3
Query: 66 YLCY*ILRLMFYKKAFVRKCLQNLLIYSIS 155
Y+CY + L+F+ +F +C +L Y+ S
Sbjct: 94 YICYFSIFLLFFAISFQAECYYSLTAYATS 123
>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 26.2 bits (55), Expect = 3.9
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Frame = +2
Query: 269 ITSNSVKILVCNNFIMEEEPALPSSVIPTLSNTSQKDNNIEGSLE-EKNTDHPD-ENSKE 442
+ +V++L N + EE +S I + + +++ +I + E N + +NS E
Sbjct: 119 LQDENVQVLNTNTITISEESEFHASKIAKIDSRNEEITHIPFETQTELNAAVVNLDNSME 178
Query: 443 NRVSIKEQHTEEELAVDT 496
+ SI + T ++ +VDT
Sbjct: 179 SSFSIVQNLTNKDSSVDT 196
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 25.8 bits (54), Expect = 5.1
Identities = 18/87 (20%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Frame = +2
Query: 362 NTSQKDNNIEGSLEEKNTDHPDENSKENRVSIKEQHTEEELA----VDTKDVNGDEENVD 529
++ +D I+G ++ DE+S++ S +E E + + T+D N D
Sbjct: 168 DSDDEDLAIDGFGAGAIAENEDESSQDESESEEEDDITEPVPSFANISTQDFNSDSAAGS 227
Query: 530 FKLTGDNEEVLEATEAEGKGEKDEEQI 610
D EE+ + +G+K++ +
Sbjct: 228 SDSEEDEEEIAKKNAFFAEGDKEKSMM 254
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 25.8 bits (54), Expect = 5.1
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Frame = +2
Query: 386 IEGSLEEKNTDHPDENSKENRVSIKEQHTEEELAVDTKDVNGDEENVDFKLTGDNE-EVL 562
IEG +E D ++ + E VS +QH E D D + L G N+ E +
Sbjct: 1373 IEGRAQEALEDEDNDATNEKMVSRSKQHASYE-GPDEADKVALRQ-----LKGSNKVEDV 1426
Query: 563 EATEAEGKGEKDEEQIKE 616
E E +G K +E + +
Sbjct: 1427 NMDEEEDEGFKSDESVSD 1444
>SPAC1093.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 25.8 bits (54), Expect = 5.1
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 341 SVIPTLSNTSQKDNNIEGSLEEKNTDHPDENSKENRVSI 457
S+ P + +Q + + S EE+N D +++ K RVS+
Sbjct: 661 SLNPFIPRRNQPRDMFKTSAEEENEDEDEDDDKFRRVSL 699
>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
Utp5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 666
Score = 25.4 bits (53), Expect = 6.8
Identities = 15/79 (18%), Positives = 33/79 (41%)
Frame = +2
Query: 383 NIEGSLEEKNTDHPDENSKENRVSIKEQHTEEELAVDTKDVNGDEENVDFKLTGDNEEVL 562
N+ LE++ + + + + ++ + A +KD DEE + G E +
Sbjct: 549 NLHSILEDRASKYSSMLALQGKLDLVLSQIAFRKAGGSKDNAEDEEPISIYYEGYEESMD 608
Query: 563 EATEAEGKGEKDEEQIKEE 619
EA+ +G ++ + E
Sbjct: 609 EASSTGDEGYSSDDSVDNE 627
>SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 684
Score = 25.4 bits (53), Expect = 6.8
Identities = 15/75 (20%), Positives = 32/75 (42%)
Frame = +2
Query: 236 RCCDNYLV*NRITSNSVKILVCNNFIMEEEPALPSSVIPTLSNTSQKDNNIEGSLEEKNT 415
R +NYLV S+K ++ +NF+ + +I + + + N + +
Sbjct: 378 RTYENYLVRTDPRERSIKSMLSDNFLQRSSNNYDNEIIEKVDSANSNKNATNDIKDLQTE 437
Query: 416 DHPDENSKENRVSIK 460
+ +E + + SIK
Sbjct: 438 EIVEEGNSIDLESIK 452
>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 25.4 bits (53), Expect = 6.8
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +2
Query: 338 SSVIPTLSNTSQKDNNIEGSLEEKNTDHPDENSKENRVSIKE 463
SS TLS + K + EG+LE+ T +E + KE
Sbjct: 151 SSAQATLSFVASKPSQPEGNLEDIQTSSQEEEHDNEKDKTKE 192
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1811
Score = 25.4 bits (53), Expect = 6.8
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +2
Query: 320 EEPALPSSVIPTLSNTSQKDNNIEGSLEEKNTDHPD--ENSKENRVSIKE 463
EEP S P+ S +N+E S + TD P EN K + ++E
Sbjct: 656 EEPQKSKSEPPSAGINSTSMDNLESSGQALATDDPSQFENLKHRKKQLQE 705
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 25.0 bits (52), Expect = 9.0
Identities = 14/89 (15%), Positives = 37/89 (41%)
Frame = +2
Query: 359 SNTSQKDNNIEGSLEEKNTDHPDENSKENRVSIKEQHTEEELAVDTKDVNGDEENVDFKL 538
S++S D+ E S E+ ++ +S+ S E + ++ + E+N
Sbjct: 182 SSSSSSDSESESSSEDSDSSSSSSDSESE--SSSEGSDSSSSSSSSESESSSEDNDSSSS 239
Query: 539 TGDNEEVLEATEAEGKGEKDEEQIKEENK 625
+ D+E + +++ + + + +K
Sbjct: 240 SSDSESESSSEDSDSSSSSSDSESESSSK 268
>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1010
Score = 25.0 bits (52), Expect = 9.0
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -3
Query: 262 LNKIIITASGFSKIFP*YNYKVV 194
+N + A GF+++FP + Y VV
Sbjct: 683 VNDFVEAADGFAEVFPQHKYAVV 705
>SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex
subunit 8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 214
Score = 25.0 bits (52), Expect = 9.0
Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 4/93 (4%)
Frame = +2
Query: 353 TLSNTSQKDNNIEGSLEEKNTDHPDENSKENRVSIKEQHTEEELAV--DTKDVNGDEENV 526
T +T +D N+ +E D + + + +++ +E + + K E
Sbjct: 52 TTDSTGARDANLSLKTQEPIVSADDAKGAQGKGADEKEEKKETIQPPEEVKTEPPQPEEK 111
Query: 527 DFKLTGDNEEVL--EATEAEGKGEKDEEQIKEE 619
+ K + EE EA E + GE++EE+ +EE
Sbjct: 112 EGKEAKEPEEPPKEEAEEPQEGGEEEEEEEEEE 144
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 25.0 bits (52), Expect = 9.0
Identities = 16/75 (21%), Positives = 29/75 (38%)
Frame = +2
Query: 395 SLEEKNTDHPDENSKENRVSIKEQHTEEELAVDTKDVNGDEENVDFKLTGDNEEVLEATE 574
S+ +K + KEN V + +EEE + ++ + EE +E E
Sbjct: 306 SIPKKQNESSSTIQKENTVQQEASSSEEEAVKSLPETQRTTSRIETQEEEIKEEEMEGEE 365
Query: 575 AEGKGEKDEEQIKEE 619
E + E + + E
Sbjct: 366 EEEEEEVPNYESENE 380
>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.0 bits (52), Expect = 9.0
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +2
Query: 350 PTLSNTSQKDNNIEGSLEEKNTDHPDENSKE---NRVSIKEQHTEEELAVDTKDVNGDEE 520
P +SN + + + SLE+ + DE S + +++ + + LA D D+ ++E
Sbjct: 290 PEISNYDETEGKVNFSLEDSESLEFDEGSDDYDYAKLTTELVGNTDSLAEDEDDILEEDE 349
Query: 521 NVD 529
+ D
Sbjct: 350 DED 352
>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 959
Score = 25.0 bits (52), Expect = 9.0
Identities = 20/79 (25%), Positives = 30/79 (37%)
Frame = +2
Query: 389 EGSLEEKNTDHPDENSKENRVSIKEQHTEEELAVDTKDVNGDEENVDFKLTGDNEEVLEA 568
E EE +TD +E S +S ++ EEL V D + EE++
Sbjct: 691 EDDFEEIDTDEIEEQSDWEMISNQDASDNEELERKLDKVLEDADAKVKDEESSEEELMND 750
Query: 569 TEAEGKGEKDEEQIKEENK 625
+ EK E +E K
Sbjct: 751 EQMLALDEKLAEVFRERKK 769
>SPBC1347.04 |tim54||TIM22 inner membrane protein import complex
subunit Tim54|Schizosaccharomyces pombe|chr 2|||Manual
Length = 347
Score = 25.0 bits (52), Expect = 9.0
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 533 KLTGDNEEVLEATEAEGKGEKDEEQIKEENK 625
KL +N+E E E EGK +KD+++ + K
Sbjct: 178 KLEANNKE--EKEEKEGKDDKDDKEDSNDTK 206
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,099,382
Number of Sequences: 5004
Number of extensions: 42454
Number of successful extensions: 246
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -