Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16o18
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    58   9e-10
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    43   5e-05
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    32   0.066

>SPAC26A3.09c |rga2||GTPase activating protein
            Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 58.4 bits (135), Expect = 9e-10
 Identities = 41/136 (30%), Positives = 68/136 (50%), Gaps = 7/136 (5%)
 Frame = +3

Query: 282  IFGVPLQQSVERSRCHDDTGLPLVVRDSIDYLQA-HGLKSKDIYRTEPDKIKSQQLRKLF 458
            IFG+PL ++V  S   +D+GLP+VV   I+YL++    K + IYR        + L++ F
Sbjct: 1062 IFGLPLNEAVNISTQFNDSGLPIVVYRCIEYLESCRAEKEEGIYRLSGSASTIKHLKEQF 1121

Query: 459  TDRGPTFPY-----HWDVPVACAMLKAFISELPESILTQELHGQFEQATAIAEPQRE-AT 620
             + G  +        +DV V   +LK ++  LP ++L   +H  FE    +         
Sbjct: 1122 NE-GVDYDLLSSDEEFDVHVIAGLLKLYLRNLPTNLLDTSMHKLFELLPNVPNDSAALGE 1180

Query: 621  MTNLINKLPNCNHNLL 668
            + ++I+KLP  N  LL
Sbjct: 1181 LCDVISKLPPENFALL 1196


>SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1150

 Score = 42.7 bits (96), Expect = 5e-05
 Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 9/130 (6%)
 Frame = +3

Query: 285  FGVPLQQSVERSRCHDDTG-------LPLVVRDSIDYLQAHGLKSKDIYRTEPDKIKSQQ 443
            FGVPL+  VER+      G       +P  + +++  ++   +    ++R   +  + ++
Sbjct: 835  FGVPLEILVERNNAQSTVGTGVGVKHIPAFIGNTLAAMKRKDMSVVGVFRKNGNIRRLKE 894

Query: 444  LRKLFTDRGPTFPYHWDVPV-ACAMLKAFISELPESILTQELHGQFEQATAI-AEPQREA 617
            L  +      +  Y  + P+   A+LK F+ ELP+ +LT +L G F  ++ + +E +R  
Sbjct: 895  LSDMLDVSPDSIDYEQETPIQLAALLKKFLRELPDPLLTFKLFGLFITSSKLESEEERMR 954

Query: 618  TMTNLINKLP 647
             +   I  LP
Sbjct: 955  VLHLTICLLP 964


>SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 969

 Score = 32.3 bits (70), Expect = 0.066
 Identities = 23/105 (21%), Positives = 48/105 (45%), Gaps = 1/105 (0%)
 Frame = +3

Query: 303  QSVERSRCHDDTGLPLVVRDSIDYLQAHGLKSKDIYRTEPDKIKSQQLRKLFTDRGPTFP 482
            +S+E     + + LP V+   +  + AHGL+ + IYR      + + L   F +      
Sbjct: 780  RSLENQLKIEGSVLPQVIAMCVSCVDAHGLEVEGIYRISGSASQVRVLVDEFENGSIRME 839

Query: 483  YHWDVPVAC-AMLKAFISELPESILTQELHGQFEQATAIAEPQRE 614
            +      AC ++LK ++  LPE ++    + +  +A  I + + +
Sbjct: 840  HLTSDLFACTSVLKTYLHRLPEPVIPGTQYEELLEAEKIEKEEEK 884


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,254,214
Number of Sequences: 5004
Number of extensions: 42799
Number of successful extensions: 119
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)