Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16o18
         (677 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0413 + 17854787-17854847,17855362-17855606,17856127-178561...    66   3e-11
12_02_0615 + 21242819-21243201,21244510-21244630,21244728-212448...    37   0.017
04_03_0664 + 18501248-18502802,18503370-18505054                       29   2.6  
04_04_1438 - 33609242-33609349,33609571-33609663,33609840-336098...    28   6.0  
01_07_0067 - 40857544-40858164,40858265-40858370,40858541-408586...    28   6.0  
11_01_0477 - 3688357-3690042                                           28   7.9  
02_03_0091 + 15112390-15112396,15113469-15113962                       28   7.9  

>07_03_0413 +
           17854787-17854847,17855362-17855606,17856127-17856189,
           17856276-17856294,17856547-17856645,17856725-17856802,
           17856891-17857135,17857796-17857952,17858161-17858303
          Length = 369

 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 42/139 (30%), Positives = 74/139 (53%), Gaps = 2/139 (1%)
 Frame = +3

Query: 267 GVA-LPIFGVPLQQSVERSRCHDDTGLPLVVRDSIDYLQAHGLKSKDIYRTEPDKIKSQQ 443
           GVA   +FGVP++ +V+R +      +PLV+    DYL   GL ++ ++++E +K   QQ
Sbjct: 124 GVASTDVFGVPIEATVQREQ--SGKAVPLVLVRCADYLVISGLSNEYLFKSEGEKKVLQQ 181

Query: 444 LRKLFT-DRGPTFPYHWDVPVACAMLKAFISELPESILTQELHGQFEQATAIAEPQREAT 620
           L  L+  D G  FP   +     A++K +++ +PE + T  L+ +   A         A 
Sbjct: 182 LVSLYNEDSGAPFPDGVNPIDVAALIKCYLASIPEPLTTFSLYDELRDARVSI-----AD 236

Query: 621 MTNLINKLPNCNHNLLAWL 677
           + N++ KLPN N+  L ++
Sbjct: 237 LRNILKKLPNVNYMTLEFV 255


>12_02_0615 +
           21242819-21243201,21244510-21244630,21244728-21244847,
           21245015-21245245,21245365-21245862
          Length = 450

 Score = 36.7 bits (81), Expect = 0.017
 Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
 Frame = +3

Query: 282 IFGVPLQQSVERSRC-HDDTG--LPLVVRDSIDYLQAHG-LKSKDIYRTEPDKIKSQQLR 449
           +FGV    S E  +C +D  G  +P ++    + L A G LK++ I+R  P+  + + +R
Sbjct: 131 VFGV----SAESMQCTYDGKGNSVPTILLHMQERLYAQGGLKAEGIFRINPENDQEEHVR 186

Query: 450 KLFTDRGPTFPYHWDVPVACAMLKAFISELPESIL 554
               ++G   P   DV    +++KA+  ELPE +L
Sbjct: 187 DQL-NKG-VVPEDIDVHCLASLIKAWFRELPEGVL 219


>04_03_0664 + 18501248-18502802,18503370-18505054
          Length = 1079

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 251 RNFHIGSCAPYIRCTTATVCGALSL 325
           +  H+GSC  Y  C   ++CG  SL
Sbjct: 827 KKLHVGSCGTYETCLVNSLCGLTSL 851


>04_04_1438 -
           33609242-33609349,33609571-33609663,33609840-33609884,
           33610000-33610055,33610362-33610468,33610605-33610806,
           33611068-33611122,33611129-33611167,33611664-33611725,
           33611875-33611988,33612618-33612627,33612750-33612835,
           33613008-33613377
          Length = 448

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 399 SILIRVPVSNRCCLGRPAVDRCRHGNESAPQTVA 298
           S ++R P   R C G P+V R    + S+PQ  A
Sbjct: 26  SSILRAPNRGRLCPGSPSVLRASSSSPSSPQPTA 59


>01_07_0067 -
           40857544-40858164,40858265-40858370,40858541-40858659,
           40859195-40859392,40859659-40859724,40859798-40859916,
           40860295-40860580
          Length = 504

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -2

Query: 358 RTTSGRPVSSWQRERSTDCCSGTPNIGSATPNVKISS 248
           R  + R  S WQRE+STD  S +P         K SS
Sbjct: 50  RQWTERVRSLWQREKSTDQISSSPGTSQVAAAAKPSS 86


>11_01_0477 - 3688357-3690042
          Length = 561

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 399 SILIRVPVSNRCCLGRPAVDRCRHGN 322
           ++L  V VS RCC GR    +C H +
Sbjct: 294 TVLKLVDVSPRCCCGRRGATQCDHSS 319


>02_03_0091 + 15112390-15112396,15113469-15113962
          Length = 166

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 294 PLQQSVERSRCHDDTGLPLVVRDSI 368
           PL   +  +  HDDTG PL++ D +
Sbjct: 132 PLPSDLSYAFLHDDTGSPLIISDKL 156


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,810,860
Number of Sequences: 37544
Number of extensions: 281378
Number of successful extensions: 855
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)