Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte16o16
(686 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0928 + 26024589-26024645,26024900-26024956,26025464-260257... 107 6e-24
02_05_0759 + 31545473-31546204 57 2e-08
07_01_0677 + 5087584-5087589,5088890-5089172,5093561-5093704,509... 33 0.21
04_04_0941 - 29544252-29544355,29545155-29545299,29545637-295457... 29 2.6
03_06_0766 - 36106116-36106230,36106598-36106716,36106880-361069... 29 4.6
03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,324... 29 4.6
06_01_1006 + 7836366-7836460,7836568-7836626,7836877-7836961,783... 28 8.0
>06_03_0928 +
26024589-26024645,26024900-26024956,26025464-26025707,
26026126-26026238,26026675-26026761,26026843-26026962
Length = 225
Score = 107 bits (258), Expect = 6e-24
Identities = 57/171 (33%), Positives = 93/171 (54%), Gaps = 1/171 (0%)
Frame = +1
Query: 118 KPPIPVFGVEGRYVSALYSAAAQKNQLDDVEKHLQ-ILNKELLKPKMIDFIETCVINSAA 294
K P ++G G Y SAL+ AA+ N LD VE ++ ++ P FI+ +
Sbjct: 38 KVPEALYGGTGNYASALFLTAAKANLLDKVETEIRDVVEASKKSPLFSQFIKDLSVPKET 97
Query: 295 KAKMLKQVANEAGMPDTAINFLELVAENGRLKLLRKMINKFLAVMVAHRNEALCEVITAQ 474
+ K + ++ EAG D NFL ++A+NGRLK + ++ +F+ + +AH+ E V T
Sbjct: 98 RVKAITEIFAEAGFSDVTKNFLAVLADNGRLKHIDRIAERFVDLTMAHKGEVKVLVRTVI 157
Query: 475 PLDDSTRKILMDALKKFVKEGKNIQLTEKVDPSIMGGMIVGIEDKHIDMSI 627
PL + K L + L+ + + K I + +K+D SIMGG+++ K DMSI
Sbjct: 158 PLPEKEEKELKETLQDILGKNKTILIEQKIDYSIMGGLVIQFGQKVFDMSI 208
>02_05_0759 + 31545473-31546204
Length = 243
Score = 56.8 bits (131), Expect = 2e-08
Identities = 37/179 (20%), Positives = 84/179 (46%), Gaps = 3/179 (1%)
Frame = +1
Query: 109 LAKKPPIPVFGVEGRYVSALYSAAAQKNQLDDVEKHLQILNKELLKPKMIDFIETCVINS 288
LA++ EG Y +AL A++ L+ L+ L K + + +F + +
Sbjct: 50 LARRRAAADAAAEG-YATALSEVASENGTLEATVSDLEKLEKIFAEEAIAEFFDNPTVPR 108
Query: 289 AAKAKMLKQVANEAGMPDTAINFLELVAENGRLKLLRKMINKFLAVMVAHRNEALCEVIT 468
KA+++ ++A + + +NFL +V +NGR L+ +++ +F + + V +
Sbjct: 109 DEKAQLIDEIAKSSELQAHVVNFLNVVVDNGRAGLMTQIVREFENAFNSLTGTEVATVTS 168
Query: 469 AQPLDDSTRKILMDALKKFVKEGKNIQLTEKVDPSIMGGMIV--GIEDKH-IDMSIARK 636
L+ + ++ + KN+++ ++DP ++ G + G + IDMS+ ++
Sbjct: 169 VVQLESQDLAQIAQQVQN-LTGAKNVRVKTRIDPELIAGFTIQYGRDGSSLIDMSVRKQ 226
>07_01_0677 +
5087584-5087589,5088890-5089172,5093561-5093704,
5094167-5095269
Length = 511
Score = 33.1 bits (72), Expect = 0.21
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Frame = -3
Query: 669 DCFRISVYI*IFSRYTHVYVFIFNSHD----HASHNRWIHFLCQLYILAFLYELFKGIHK 502
D F +S + + S T V+ FI+ D + H RW+H L + LA + L +++
Sbjct: 413 DIFLVSNTVAMCSSITVVFCFIWAWRDPVKFNLEHLRWVHMLTVIACLAMIVSLMTSVYQ 472
Query: 501 DFSG 490
+ +G
Sbjct: 473 EVAG 476
>04_04_0941 -
29544252-29544355,29545155-29545299,29545637-29545775,
29545836-29545893,29546012-29546123,29546311-29546484,
29547276-29547450,29547531-29547589,29548008-29548109,
29548178-29548212,29549017-29549111,29549638-29549686,
29549754-29549812,29549978-29550051,29550204-29550296,
29550389-29550769
Length = 617
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 448 ALCEVITAQPLDDSTRKILMDALKKFVKEGKN 543
AL E+ + DD+ R + +DAL FVK GK+
Sbjct: 112 ALVELTVSPHSDDAIRDLALDALMDFVKLGKD 143
>03_06_0766 - 36106116-36106230,36106598-36106716,36106880-36106960,
36107062-36107118,36107350-36107373,36107810-36107909,
36107983-36108053,36108132-36108236,36108674-36108847,
36109406-36109555,36109701-36109871,36109968-36110024,
36110107-36110142,36110165-36110357,36110439-36110578,
36110960-36111166,36111442-36111498,36111711-36111809,
36112289-36112408,36112865-36113032,36113450-36113510,
36113611-36113720,36114132-36114263,36114344-36114511,
36115118-36115182,36115242-36115372,36115450-36115487,
36116272-36116373,36116480-36116537,36117479-36117580,
36117695-36117909,36118158-36118307,36118699-36118858,
36118984-36119042,36119287-36119443,36119536-36119681,
36121376-36121648,36122889-36122891
Length = 1457
Score = 28.7 bits (61), Expect = 4.6
Identities = 26/81 (32%), Positives = 41/81 (50%)
Frame = +1
Query: 154 YVSALYSAAAQKNQLDDVEKHLQILNKELLKPKMIDFIETCVINSAAKAKMLKQVANEAG 333
+++ + A AQ+N+ ++ LQ L +L K + E + KA+M K + E
Sbjct: 857 FIADVEEAKAQENK--KLQLQLQDLQMQLNDTKELLKRE----KESTKAEMEKTLVPEIC 910
Query: 334 MPDTAINFLELVAENGRLKLL 396
+ T +N EL AEN RLK L
Sbjct: 911 VDTTQVN--ELTAENNRLKAL 929
>03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,
3242494-3242836,3244138-3248540,3248928-3249107,
3249108-3250892,3251055-3252173
Length = 2727
Score = 28.7 bits (61), Expect = 4.6
Identities = 36/128 (28%), Positives = 63/128 (49%), Gaps = 9/128 (7%)
Frame = +1
Query: 193 QLDDVEKHLQILNKEL-LKPKMIDFIETCVINSAAKAKMLKQVA-----NEAGMPDTAIN 354
+L + EK++QIL+KEL K + +D ++ +N A+ ++ +VA N +
Sbjct: 1375 ELVNAEKNVQILDKELKQKREEVDSLQAS-LNEEAQKRIEGEVALLAMENLHSQSQEEVR 1433
Query: 355 FLELVAE--NGRLKLLRKMINKFLAVMVAHRNEALCEVITAQPLD-DSTRKILMDALKKF 525
L L E +G+L + N+ L M+ +E + V+ Q L + T K L D L+KF
Sbjct: 1434 GLVLKIETLHGKLNEMENS-NRDLKNMICKHSEEI-HVLGEQNLSAELTIKGLHDQLEKF 1491
Query: 526 VKEGKNIQ 549
+ +Q
Sbjct: 1492 TEMNIGLQ 1499
>06_01_1006 +
7836366-7836460,7836568-7836626,7836877-7836961,
7837349-7837496,7837774-7837986,7838403-7838537,
7838659-7838790,7838884-7839099,7839212-7839336,
7839787-7839844,7839977-7840087
Length = 458
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 211 FQRHPIDFFVQPHYRVLIHTALQHQILV 128
FQ PI HYR+L H L+H+ L+
Sbjct: 326 FQTEPIVNMDLDHYRILHHRLLEHEELI 353
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,867,976
Number of Sequences: 37544
Number of extensions: 378882
Number of successful extensions: 983
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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