Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte16o14
(683 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0521 - 22904656-22904962,22905132-22905340,22905432-229055... 58 6e-09
04_04_0339 - 24513699-24516827 31 1.1
12_02_1123 - 26250300-26250362,26251988-26252042,26252128-262522... 30 1.5
06_01_0160 - 1205454-1205482,1205647-1205732,1205903-1205956,120... 29 2.6
08_02_0610 + 19307537-19308011,19308187-19310846 28 6.0
04_03_0357 + 14852584-14853058,14853116-14855754 28 6.0
09_02_0022 + 3065644-3065953,3066048-3067162,3067261-3067437,306... 28 7.9
05_03_0373 - 13194723-13195847,13196219-13196809 28 7.9
>01_05_0521 -
22904656-22904962,22905132-22905340,22905432-22905521,
22905624-22905734,22906401-22906468,22906611-22906653
Length = 275
Score = 58.0 bits (134), Expect = 6e-09
Identities = 41/131 (31%), Positives = 66/131 (50%)
Frame = +3
Query: 285 MAPPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLSSK 464
MAP Y D+GKK D+ + Y K L T + GV T+ T ES VFG L ++
Sbjct: 1 MAPGLYTDIGKKTRDLLYRDYGTH-HKFTLTTCTPEGVTITAAGTRKNES--VFGELQTQ 57
Query: 465 FAVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTND 644
+K+ LT K N+++ L T +T+ + GLK L Q ++GKL+ + ++
Sbjct: 58 --LKNKKLTVDVKANSESDLLTTVTVDEFGTPGLKSILSLVVPDQ---RSGKLELQYLHE 112
Query: 645 TVAVNTNLDLD 677
+N ++ L+
Sbjct: 113 YAGINASVGLN 123
>04_04_0339 - 24513699-24516827
Length = 1042
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +3
Query: 69 INQLRKLYDRLPFVDAAVTQETISCLRPDGTIGQMIICKDEDGEIQCPNNETIQSQENKF 248
+NQLR L ++ A + TIS LRP ++ ++ IC E+ N +Q +
Sbjct: 699 MNQLRNLEILPRYIAAENHEHTISELRPLVSLKELSICNMENASFDDARNVILQKKNRLV 758
Query: 249 SL 254
SL
Sbjct: 759 SL 760
>12_02_1123 -
26250300-26250362,26251988-26252042,26252128-26252224,
26252364-26253048,26253354-26253721,26253931-26254074,
26254925-26255276
Length = 587
Score = 30.3 bits (65), Expect = 1.5
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = +3
Query: 294 PYYADLGKKANDVFSKGYHFGVFKLDLKTKS--ESGVEFTSGITSNQESGKVFGSLSSKF 467
P Y G + D+ SK +H LDL S + G++F SG+ S + V L+ +
Sbjct: 261 PQYVH-GTQLPDLESKFFH-----LDLMHPSVYKVGLQFLSGVISGGNACCVAMLLAFRE 314
Query: 468 AVKDYGLTFTEKWNTDNT 521
A+KDY T+ N D T
Sbjct: 315 AIKDYSTPSTKTLNRDLT 332
>06_01_0160 -
1205454-1205482,1205647-1205732,1205903-1205956,
1206035-1206130,1207332-1207448,1207834-1207952
Length = 166
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 262 GCETFTMTWLPHIMLTLERRPMMSSAR 342
GC TFT W+ H+ ++ RRP SAR
Sbjct: 6 GC-TFTTGWMQHLAASVLRRPPRGSAR 31
>08_02_0610 + 19307537-19308011,19308187-19310846
Length = 1044
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Frame = -1
Query: 305 SIIWGSHVIVKVSQPSP*REFIFLALYCLIIWTLNF----TIFIFANYHLSY-CS 156
S +WGS + ++ P P + +L L +W L + TI +F + + + CS
Sbjct: 40 SDLWGSSNAIAIATPPPSEDLRYLKSSALDVWLLGYEFPETIIVFMHKQIHFLCS 94
>04_03_0357 + 14852584-14853058,14853116-14855754
Length = 1037
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Frame = -1
Query: 305 SIIWGSHVIVKVSQPSP*REFIFLALYCLIIWTLNF----TIFIFANYHLSY-CS 156
S +WGS + ++ P P + +L L +W L + TI +F + + + CS
Sbjct: 40 SDLWGSSNAIAIATPPPSEDLRYLKSSALDVWLLGYEFPETIIVFMHKQIHFLCS 94
>09_02_0022 +
3065644-3065953,3066048-3067162,3067261-3067437,
3067535-3067648,3068614-3068718,3068930-3069064,
3069148-3069203,3069277-3069382,3069515-3069631,
3069705-3069831,3069915-3070141,3070164-3070727
Length = 1050
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -2
Query: 634 NEVFNFPVL-VPVCGAKVPSRVTLRPAAILSWIVMSVANVLSVF 506
++V + VL + C + SR+ L PA+ LSW S LS F
Sbjct: 606 DQVLDVKVLKISECAQSLSSRLVLTPASKLSWFGFSENGELSSF 649
>05_03_0373 - 13194723-13195847,13196219-13196809
Length = 571
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 582 GTFAPQTGTKTGKLKTSFTNDTVAVNTNLDLDL 680
GT+ Q T TGK+ +FT + + LDLD+
Sbjct: 537 GTYVAQVTTATGKMLKTFTVEKGDNSLELDLDI 569
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,264,521
Number of Sequences: 37544
Number of extensions: 359942
Number of successful extensions: 1064
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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