Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16o12
         (347 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    26   1.9  
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    26   1.9  
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1...    26   1.9  
SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21 |Schizosac...    25   3.4  
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy...    25   3.4  
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    25   4.4  
SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp...    25   4.4  

>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -2

Query: 256 IGVNQTVSINAQCNKASPRWHLFLGGMTIIIPVCVQLRLSIVCCGS 119
           IG+    SI  +      RWH F   +   +P+C + ++ + C G+
Sbjct: 475 IGLLGISSIGVKGRHGKKRWHKFRELVKNGVPLCYKAKVWLECSGA 520


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 330 SIIYSSFTCPCILVATPLFGS*SKPLESTKL 238
           S+ +S  + P ++   PL+   SK LES+KL
Sbjct: 332 SLDFSDISSPSVMNIHPLYSFSSKSLESSKL 362


>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 322 LFVIHLPMYSRRHTFIWLMK*AIG 251
           L++   P+Y  R T ++L K AIG
Sbjct: 604 LYITFYPLYESRDTIVYLCKLAIG 627


>SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 293

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -1

Query: 269 HEVSHWSQPNCEHKRAVQQSLAKMAFIPRRNDNYH 165
           H  S+ S    E +R+  +S ++ + +PRR+ N H
Sbjct: 218 HYDSYSSYDELERRRSSNESYSRRSELPRRDYNRH 252


>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 648

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -2

Query: 340 FEEINYLF-VIHLPMYSRRHTFIWLMK*AIGVNQTVSINAQCN 215
           FEE++ L  ++  PM+++R TFI+      G+ Q +  N + N
Sbjct: 286 FEELSKLLEILGNPMHTQRQTFIFSATFDEGLQQRLKKNMKGN 328


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = +2

Query: 164 NDNCHSAEE*MPSWRGFVALRVYAHSLVDSNGLLHEPNKGVATRIHGQVN 313
           N N H  EE +P + GF       H+    + L H     +  RI+ Q N
Sbjct: 545 NVNFHLPEELVPLYEGFQNYYYSCHNGRKLSWLFHLSKGEIKARINPQTN 594


>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
           Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 188 PRRNDNYHSCLC 153
           P+R D YH+C C
Sbjct: 309 PKRPDQYHTCYC 320


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,469,719
Number of Sequences: 5004
Number of extensions: 28196
Number of successful extensions: 65
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)