Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte16o11
(637 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 35 0.011
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac... 33 0.026
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 28 0.98
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ... 28 1.3
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po... 28 1.3
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 27 1.7
SPCC594.02c |||conserved fungal protein|Schizosaccharomyces pomb... 27 2.3
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 27 3.0
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 27 3.0
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 27 3.0
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch... 27 3.0
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce... 27 3.0
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S... 26 4.0
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy... 26 4.0
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|... 26 4.0
SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16 |Schizosa... 26 4.0
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 26 5.2
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch... 26 5.2
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 26 5.2
SPAC23H4.08 |||RNA polymerase II associated protein |Schizosacch... 26 5.2
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 25 6.9
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch... 25 6.9
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 25 6.9
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po... 25 6.9
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At... 25 9.1
SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1 |Sc... 25 9.1
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc... 25 9.1
SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyce... 25 9.1
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 25 9.1
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|... 25 9.1
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 34.7 bits (76), Expect = 0.011
Identities = 34/151 (22%), Positives = 61/151 (40%), Gaps = 15/151 (9%)
Frame = +1
Query: 178 TSLEDQEQSDQDKL---HQPIRSEERYMENRRP---AHTESDNDVFNKMESDESREHISN 339
+S+++ E D D L QP ++E RP + + D N +ESD S + S
Sbjct: 130 SSIDENELVDLDTLLDNDQPEKNESNTASTIRPPWIGNNDHATDKENLLESDASSSNDSE 189
Query: 340 GRQPFTVNNQN-------VEYRGNEHYDSNNDKFLLSS--NEKSNARKTYVKQQDDSDNY 492
+ +N N +E ++H D N L + N + + K + D+++
Sbjct: 190 SELTDSADNMNESDSESEIESSDSDHDDGENSDSKLDNLRNYIVSLNQKRKKDEADAESV 249
Query: 493 FSKKSNDAFSQDRYLNRYYEDNRLNKDKITN 585
S ND+ + Y+ + NK+ N
Sbjct: 250 LSSDDNDSIEEISIKKVKYDPHETNKESEYN 280
>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 33.5 bits (73), Expect = 0.026
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Frame = +1
Query: 178 TSLEDQEQS-DQDKLHQPIRSEERY-MENRRPAHTESDNDVFNKMESDESREHISNGRQP 351
T +E ++ S D D+ + R +R+ N+ + SDN+ + + + SR N R
Sbjct: 152 TLMEKRKYSLDSDRKSKERRHRDRHHRSNQDRSRERSDNEQHSSDKREHSRRSYRNDRNN 211
Query: 352 FTVNNQNVEYRGNEHYDS 405
+ N YR + YDS
Sbjct: 212 WRERTHNDRYRHRDKYDS 229
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 28.3 bits (60), Expect = 0.98
Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +1
Query: 187 EDQEQSD-QDKLHQPIRSEERYMENRRPAHTESDNDVFNKMESDESREHISNGRQPF 354
ED+ D +++ H+P +++ RY + +E D++ F ES + +S+ F
Sbjct: 53 EDEGDEDWEEEEHKP-KAKRRYNTRSNESFSEGDDEPFEVSESSALEDELSDSEDSF 108
>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 27.9 bits (59), Expect = 1.3
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +1
Query: 391 EHYDSNNDKFLLSSNEKSNARKTYVKQQDDSDNYFSKKSNDAFSQDRY 534
EH DSN+D LSS+ ++ + +Q ++N +KS SQ+ Y
Sbjct: 506 EHADSNSDSEDLSSSANNDVHEPVARQDPFNENEV-EKSRTRPSQESY 552
>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 27.9 bits (59), Expect = 1.3
Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 6/119 (5%)
Frame = +1
Query: 256 NRRPAHTE---SDNDVFNKMESDE---SREHISNGRQPFTVNNQNVEYRGNEHYDSNNDK 417
N + HTE N + N S E R +N + +V++++++Y + + D
Sbjct: 263 NSQNEHTEVQKKSNSIDNLTPSSELFRKRSRDNNLSRESSVSSKHLDYNSRNYNKRDRDP 322
Query: 418 FLLSSNEKSNARKTYVKQQDDSDNYFSKKSNDAFSQDRYLNRYYEDNRLNKDKITNENR 594
E + R+ + SD+Y+ +S + +RY E R N D+ R
Sbjct: 323 DRTKYREYHSERRKQHRTDRYSDDYYQGRSYSYKKRSHRSDRYTE--RENPDRSYRSTR 379
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 27.5 bits (58), Expect = 1.7
Identities = 17/63 (26%), Positives = 22/63 (34%)
Frame = +1
Query: 337 NGRQPFTVNNQNVEYRGNEHYDSNNDKFLLSSNEKSNARKTYVKQQDDSDNYFSKKSNDA 516
NGR + N++ E K L S S+ T K D DNY K +
Sbjct: 484 NGRVCYPTRNKHSEISAQSSSSLGVTKSLASEVYSSSTVDTISKLNTDKDNYLIKSKKEP 543
Query: 517 FSQ 525
Q
Sbjct: 544 IQQ 546
>SPCC594.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 489
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Frame = +1
Query: 301 KMESDESREHISNGRQPF----TVNNQNVEYRGNEH 396
K SD HI+ GRQPF ++N + YR N H
Sbjct: 24 KNTSDIDLLHINRGRQPFDEGLSINEDSFFYRHNIH 59
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 26.6 bits (56), Expect = 3.0
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +1
Query: 244 RYMENRRPAHTESDNDVFNKMESDESREHISNGRQPFTVNNQNVEYRGNEH-YDSNN 411
+ +E + T ++ND+ K DE+ I + Q T NN V R N+ ++S+N
Sbjct: 1332 KLLEKNKWIFTLNENDIATKF--DENSSPIKDCSQVATTNNAKVIIRKNQRFFNSDN 1386
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 26.6 bits (56), Expect = 3.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 478 DSDNYFSKKSNDAFSQDRYLNRYYEDNRLNKD 573
+SD + K NDAFS+ + N Y + NK+
Sbjct: 538 NSDENWVSKLNDAFSKPEFKNSYQKSRFGNKE 569
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 26.6 bits (56), Expect = 3.0
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +1
Query: 433 NEKSNARKTYVKQQDDSDNYFSKKSNDAFSQDRYLNRYYED 555
NE A V Q + + YFS+ ND+ + RYY +
Sbjct: 89 NEAQVAYVLLVHQYELNTQYFSQLDNDSVLAQEFQRRYYAE 129
>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 701
Score = 26.6 bits (56), Expect = 3.0
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 502 KSNDAFSQDRYLNRYYEDNRLNKDKITNEN 591
++ + +SQ Y NRY +NRLNK K+ + +
Sbjct: 656 RAEERYSQ--YENRYENENRLNKIKLQHSS 683
>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 818
Score = 26.6 bits (56), Expect = 3.0
Identities = 17/81 (20%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Frame = +1
Query: 253 ENRRPAHTESD--NDVFNKMESDESREHISNGRQ-PFTVNNQNVEYRGNEHYDSNNDKFL 423
++++P+H + N + + IS+ + P +++ ++E R HYDSN+ +
Sbjct: 292 KDKKPSHKSNGRPNKLTAFFNKNSKASSISSAEEHPSNIDDSSIERR---HYDSNHSSQI 348
Query: 424 LSSNEKSNARKTYVKQQDDSD 486
+N +Y + SD
Sbjct: 349 RDHPSTNNNASSYQNFNETSD 369
>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1206
Score = 26.2 bits (55), Expect = 4.0
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +2
Query: 407 TMISSFYLQMKKVMHEKPTSNNKTTQIIT--FLKNQ 508
+ IS F + KK++HE P +N+ +T F KN+
Sbjct: 855 SFISVFDMISKKIIHESPLGDNEAAFSMTAAFFKNR 890
>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 384
Score = 26.2 bits (55), Expect = 4.0
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = +1
Query: 274 TESDNDVFNKMESDESREHISNGRQPFTVNNQNVEYRGNEHYDSNNDKF-LLSSNEKSNA 450
T DN F ++ DESR ++ F V++Q SN+D ++ EK +
Sbjct: 125 TSEDNASFGELMEDESRLRAEQHKRRFGVHSQQPSNSIQTIGYSNSDAIKSIAWKEKDKS 184
Query: 451 RKTYVKQQDDSDNY 492
KT+ Q ++ Y
Sbjct: 185 IKTWNYQPKNALMY 198
>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 26.2 bits (55), Expect = 4.0
Identities = 23/117 (19%), Positives = 45/117 (38%), Gaps = 1/117 (0%)
Frame = +1
Query: 187 EDQEQSDQDKLHQPIRSEERYMENRR-PAHTESDNDVFNKMESDESREHISNGRQPFTVN 363
E++ KL + +R ++ +E + A D F+ DES + ++ + +
Sbjct: 416 EEKGLKKDRKLPKKMRKAQKKLERKAGKAVAARMGDAFSNSLDDESMNLYAELQEQWLKD 475
Query: 364 NQNVEYRGNEHYDSNNDKFLLSSNEKSNARKTYVKQQDDSDNYFSKKSNDAFSQDRY 534
R E ++ L ++K R++ DSDN + + F D Y
Sbjct: 476 KSKKARRRAEREKLRSEGLLGKKSKKKLLRESQKPSSSDSDNASLTRIDKIFINDVY 532
>SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 419
Score = 26.2 bits (55), Expect = 4.0
Identities = 27/135 (20%), Positives = 64/135 (47%), Gaps = 11/135 (8%)
Frame = +1
Query: 193 QEQSDQDKLHQPIRSEERYMENRRPAHTESDNDVFNKMESDESREH---------ISNGR 345
+EQ +L + R +++ E++ SD DV + ++SD+ EH N R
Sbjct: 216 KEQKRISELEEKERIQKKAFEDKGLV---SDQDVNHSIDSDDQSEHEQAETPIPSSKNKR 272
Query: 346 QPFTVNNQNVEYRGNE--HYDSNNDKFLLSSNEKSNARKTYVKQQDDSDNYFSKKSNDAF 519
+ + N+ + R E + ++ LL + +K+ A ++Q+D ++ + +K + +
Sbjct: 273 KTRSQRNKIRQRREEELRLLEQKKNEELLRTIDKAPAISKKLQQKDKAEKFSNKAVSSST 332
Query: 520 SQDRYLNRYYEDNRL 564
++ + + + +RL
Sbjct: 333 TEIKLKKKKFGKHRL 347
>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1018
Score = 25.8 bits (54), Expect = 5.2
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = +1
Query: 403 SNNDKFLLSSNEKSNARKTYVKQQDDSDNYFSKKSNDAFSQDRYLNRYYEDNRLNKD 573
S+ND +S SNA K+ + DS SKK S + ++D+R N D
Sbjct: 525 SSNDFNSSNSRPSSNALKSDANENTDSSLPPSKKEFIEKSLHKLSEPLHDDSRQNSD 581
>SPCC1020.09 |||WD repeat protein, human WDR79
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 399
Score = 25.8 bits (54), Expect = 5.2
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Frame = -1
Query: 430 KIKGTYHCLSHSVRY---HDIQHFDY*Q*KVDGHSICVHDFHRTPFC 299
K K +YH + H RY H +Q + + + G C+H F+ C
Sbjct: 141 KNKASYHMIDHQERYQGSHCLQFTNDGEYLIAGDKNCLHHFNIRTGC 187
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1389
Score = 25.8 bits (54), Expect = 5.2
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 427 SSNEKSNARKTYVKQQDDSDNYFSKKSND 513
S+N A++T K++DDS+N KK N+
Sbjct: 326 SNNSAELAKET--KEEDDSENSVDKKENE 352
>SPAC23H4.08 |||RNA polymerase II associated protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 277
Score = 25.8 bits (54), Expect = 5.2
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = +1
Query: 388 NEHYDSNNDKFLLSS-NEKSNARKTYVKQQDDSDNYFSKKSNDAFS 522
+E DS+ D L +E SNA Y D D + ND F+
Sbjct: 221 SETVDSDKDDPLHDEIDEDSNAESFYQNSYPDEDEWQDSSENDEFA 266
>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1690
Score = 25.4 bits (53), Expect = 6.9
Identities = 18/109 (16%), Positives = 48/109 (44%)
Frame = +1
Query: 277 ESDNDVFNKMESDESREHISNGRQPFTVNNQNVEYRGNEHYDSNNDKFLLSSNEKSNARK 456
E D ++ ++ +SD S + + + +N+E G+E + + + ++
Sbjct: 1323 EEDVEMRSEDQSDTSESEVGSKDDVQSEEVENLESAGDEDEEEEPSALQANGFDWTDGST 1382
Query: 457 TYVKQQDDSDNYFSKKSNDAFSQDRYLNRYYEDNRLNKDKITNENRGFE 603
+ K DD+++ ++ + + +R ++D + D+I + FE
Sbjct: 1383 VFDKLADDTEDSEDEEDEEPKRKKSKSDR-FDDEEKDLDEIPSTAADFE 1430
>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
subfamily|Schizosaccharomyces pombe|chr 1|||Manual
Length = 887
Score = 25.4 bits (53), Expect = 6.9
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 577 FCPCLDDYLHNSDLSNDLD*KRRLIF 500
F PCL + + S+DLD +RRL++
Sbjct: 604 FLPCLCENIIPHSRSDDLDEERRLLY 629
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.4 bits (53), Expect = 6.9
Identities = 28/146 (19%), Positives = 57/146 (39%), Gaps = 1/146 (0%)
Frame = +1
Query: 178 TSLEDQEQSDQDKLHQPIRSEERYMENRRPAHTESDNDVFNKMESDESREHISNGRQPFT 357
+S +++Q ++ + P R + R P + + +K+ D+SR+ R
Sbjct: 1379 SSANERKQEERRRKTTP-EGNRRALRTRTPTNEDIQRSD-SKLREDQSRDRTPQSRSFTN 1436
Query: 358 VNNQNVEYRGNEHYDSNNDKFLLSSNEKSNARKTYVKQQDDS-DNYFSKKSNDAFSQDRY 534
NN N+ R + + + NAR+ + Q+ D + N S +
Sbjct: 1437 ENNDNL--RSVSRHTRREPQ----QAQNLNARREHESQKSDRWRQNGNVNRNPRVSNNNS 1490
Query: 535 LNRYYEDNRLNKDKITNENRGFEILE 612
N E + + +N+N+ E+ E
Sbjct: 1491 TNVSRERSSEANHRTSNDNKRDEVTE 1516
>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 449
Score = 25.4 bits (53), Expect = 6.9
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +1
Query: 517 FSQDRYLNRYYEDNRLNKDKI 579
F QD + + Y+E+ +LNKD++
Sbjct: 188 FFQDTFGSLYWEEGKLNKDEM 208
>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 25.0 bits (52), Expect = 9.1
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +1
Query: 370 NVEYRGNEHYDSNNDKFLLSSNEKSNARKTYVKQQDDSDNYFSKKSND 513
+V+YR N H++ ++ LL SN+ +A K + ++S ++ K D
Sbjct: 256 SVQYRKNCHFEVHDSDALL-SNQLLSADKHQLAASNNSQDFEDGKQYD 302
>SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 25.0 bits (52), Expect = 9.1
Identities = 8/36 (22%), Positives = 22/36 (61%)
Frame = -1
Query: 277 QCVLDDGFPYSALRTELVDAVYLDHFVPGLLRMYRH 170
+C+L++ FP + + E++ ++L + G+ ++ H
Sbjct: 97 ECILNNDFPNAKNQPEMIKNIFL-QIIDGVAHLHSH 131
>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 457
Score = 25.0 bits (52), Expect = 9.1
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = -2
Query: 306 HFVEHIVIRF-SVCWTTVFHIALFGPNWLMQFILITLFLVF 187
H H++ F +VC ++ L GP LM +I L+F
Sbjct: 400 HSPSHLIGHFYAVCLYGIYQYVLSGPALLMPVRIIESLLIF 440
>SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 579
Score = 25.0 bits (52), Expect = 9.1
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Frame = -2
Query: 333 YVFTTFIGLHF-VEHIVIRFSVCWTTVFHIALFGPNWLMQFILITLFLVF*GCIVIVRIC 157
Y F F+ F + I F+ WT V + A++ +L+ I I LF V V +
Sbjct: 162 YFFNYFVTFPFELTTCAITFTF-WTDV-NCAVWISIFLVVVIGINLFGVRVFGEVEFVLA 219
Query: 156 LVNSVVAVLGFFKITVFVNC 97
L+ VVA +GF + + +NC
Sbjct: 220 LIK-VVATVGFIILAIIINC 238
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 25.0 bits (52), Expect = 9.1
Identities = 21/108 (19%), Positives = 44/108 (40%), Gaps = 6/108 (5%)
Frame = +1
Query: 202 SDQDKLHQPIRSEERYMENRRPAHTESDNDVFNK-----MESDESREHISNGRQPFTVNN 366
SD D + IR +R ++R + ESD + + ES + + +
Sbjct: 4 SDSDSVSLSIRRRQRRGSSKRISMKESDEESDSSENHPLSESLNKKSKSESDEDDIPIRK 63
Query: 367 QNVEYRGNEHYDSNNDKF-LLSSNEKSNARKTYVKQQDDSDNYFSKKS 507
+ + N S+ + ++ + N +KT V ++++ N +K S
Sbjct: 64 RRASSKKNMSNSSSKKRAKVMGNGGLKNGKKTAVVKEEEDFNEIAKPS 111
>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 714
Score = 25.0 bits (52), Expect = 9.1
Identities = 13/53 (24%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = +1
Query: 436 EKSNARKTYVKQQDDSDNYF---SKKSNDAFSQDRYLNRYYEDNRLNKDKITN 585
+ +++ KT+ K++ S+N F +K + S ++ +++NR KD T+
Sbjct: 102 QTASSNKTFSKRKRSSENSFNNRNKAKSSETSDSSNTSQSFKENRALKDTATS 154
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,213,069
Number of Sequences: 5004
Number of extensions: 43463
Number of successful extensions: 193
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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