Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte16o10
(660 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 29 0.59
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ... 28 1.4
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa... 27 2.4
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac... 27 2.4
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm... 27 3.2
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos... 26 4.2
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma... 26 5.5
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 7.3
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch... 25 9.7
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe... 25 9.7
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 29.1 bits (62), Expect = 0.59
Identities = 23/77 (29%), Positives = 38/77 (49%)
Frame = -1
Query: 435 YFPIFPHFYRLFLYPLYPAII*LAFSKLYNYPYL*KVLFLLNPCLVAMNIRI*TVWFPRL 256
YF FP + LF + L + L+F L++ +L + L P L+ + + + PRL
Sbjct: 146 YFSSFPILHFLFFFFLCVCVF-LSF--LFSLSHLLSLAILFLPLLLRVFSTLSRL--PRL 200
Query: 255 YCRLLNSKV**ILPFKF 205
+C L K ++PF F
Sbjct: 201 FCLCLQKKRRVLIPFAF 217
>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 27.9 bits (59), Expect = 1.4
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -3
Query: 346 LSLFVKGFIFIESMFGCYEYSYINSLVSTVILSSFKQQSIINIT 215
+ LF+ F FI F +SY S+ +I+SS SI+N T
Sbjct: 1 MKLFLYHFTFIVYYF-IISFSYAFSIKQEIIVSSHNASSILNTT 43
>SPAC806.08c |mod21||gamma tubulin complex subunit
Mod21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 618
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +3
Query: 243 KDDNITVETKLFIYEYS*QPNMDSIKIKPF 332
+ DN + +++ S QPN+D ++IKPF
Sbjct: 124 ESDNASNNKLCTLFKKSKQPNLDFLQIKPF 153
>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
Vps23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 487
Score = 27.1 bits (57), Expect = 2.4
Identities = 20/92 (21%), Positives = 39/92 (42%)
Frame = +3
Query: 279 IYEYS*QPNMDSIKIKPFTNKDNYKAWRKLIKLLLDTKGIKIDDKNEEKLENKGKFIIFS 458
+Y +PN+D +KI+ +K N K I + +K +++ + ++ E +
Sbjct: 331 LYSEDFKPNVDPVKIQQILHKQNKIIEEKWISQIRISKNLEVKQRLLDQ-ERHALETLAK 389
Query: 459 YIEEKYLHYVINLETIIEIFEKLDFMYDFNIQ 554
IE E +KLD + D ++Q
Sbjct: 390 NIENNRFILGKRRRKAREALQKLDNLKDLSVQ 421
>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
intermediate chain Dic1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 544
Score = 26.6 bits (56), Expect = 3.2
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +3
Query: 372 KLLLDTKGIKIDDKNEEKLENKGKFIIFSYIEEKY-LHYVINLETIIEIFEKL 527
+L D K KN+ +LE G +F++ +EK L+ V+N + FE+L
Sbjct: 155 QLFTDYTVKKKSKKNKSQLEENGLNHLFTFQDEKITLNSVVNSISYSSFFEEL 207
>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 400
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3
Query: 330 FTNKDNYKAWRKLIKLLLDTKGIKID 407
FT K NY RKL + LL KG + D
Sbjct: 261 FTEKPNYAYLRKLFRDLLIRKGYQYD 286
>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 629
Score = 25.8 bits (54), Expect = 5.5
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = -3
Query: 307 MFGCYEYSYINSLVSTVILSSFKQQSIINITF*ICSGPITCWMVTFEGIGFC 152
MFG + + LV+T I+ S II + F +CS W +F GFC
Sbjct: 520 MFG-FSFFCFGILVTTCIMVS-----IITVYFQLCSENYNWWWRSFITPGFC 565
>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 500
Score = 25.4 bits (53), Expect = 7.3
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +3
Query: 405 DDKNEEKLENKGKFIIFSYIEEKYLHY--VINLETIIEIFEKLDFMYD 542
DD++ KL K KF++F E ++ Y V + I I+ + YD
Sbjct: 299 DDEDRPKLSWKHKFLLFFLAEVAFIAYFTVNGYQASISIYTGKLYNYD 346
>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 577
Score = 25.0 bits (52), Expect = 9.7
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -1
Query: 432 FPIFPHFYRLFLYPLYPAI 376
F I PH F+YP+YP +
Sbjct: 324 FIIQPHKEERFMYPIYPVL 342
>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 25.0 bits (52), Expect = 9.7
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +2
Query: 2 TSHLDTA*KTCNSFIKKYKDKNCIMV*KC*SYLQYNYNEAVVFLNSPSS 148
TSHLDT K + FI+K +C ++ Y +N +L P S
Sbjct: 268 TSHLDTLTKGISQFIEKRDAHSCKLL-----YALLQFNHETEYLIQPWS 311
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,631,297
Number of Sequences: 5004
Number of extensions: 57312
Number of successful extensions: 143
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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