Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16o10
         (660 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0151 + 5895708-5895736,5896291-5896403,5897956-5898064,589...    29   3.3  
03_06_0105 + 31675083-31675313,31676171-31676815                       28   7.6  

>10_02_0151 +
           5895708-5895736,5896291-5896403,5897956-5898064,
           5898580-5898658,5898747-5898863,5900001-5900138
          Length = 194

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +2

Query: 128 FLNSPSSPTEPNPFKCNHPTGYGPRTNLKGNIYYTLL 238
           F  SPS P EP   KC     Y P  +L+GN+   +L
Sbjct: 92  FQVSPSYPHEPPKVKCKTKV-YHPNIDLEGNVCLNIL 127


>03_06_0105 + 31675083-31675313,31676171-31676815
          Length = 291

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/67 (25%), Positives = 27/67 (40%)
 Frame = +3

Query: 411 KNEEKLENKGKFIIFSYIEEKYLHYVINLETIIEIFEKLDFMYDFNIQGTRYKTRNEFFR 590
           KN+     K +FI    +    LH  + ++ +I  FEK   + D  +   R   R   F 
Sbjct: 97  KNQNDSVQKNQFIFQKKVFVGGLHETVTVKDLISYFEKFGTITDAVVMRNRTTNRARGFG 156

Query: 591 DAIFGNH 611
              F +H
Sbjct: 157 FISFDSH 163


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,633,606
Number of Sequences: 37544
Number of extensions: 279514
Number of successful extensions: 585
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)