Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16o10
         (660 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-2476|AAF55520.1|   89|Drosophila melanogaster CG18598-P...    38   0.012
BT011524-1|AAS15660.1|   89|Drosophila melanogaster RH42419p pro...    36   0.037
AF541947-1|AAN34649.1|  404|Drosophila melanogaster gag protein ...    30   3.2  
AY089674-1|AAL90412.1|  317|Drosophila melanogaster RH46018p pro...    28   9.8  

>AE014297-2476|AAF55520.1|   89|Drosophila melanogaster CG18598-PA
           protein.
          Length = 89

 Score = 37.9 bits (84), Expect = 0.012
 Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
 Frame = +3

Query: 315 IKIKPFTNKDNYKAWRKLIKLLLDTKGI-----KIDDKNEEKL--ENKGKFIIFSYIEEK 473
           ++I+     DNYKAW   ++  L+++ +        + NEE L  + + KF+I   IE K
Sbjct: 5   LQIEKLKGLDNYKAWSMTVRAYLESEELWTVVENGPENNEESLLKDKRAKFLILCLIETK 64

Query: 474 YLHYVINLETIIEIFEKL 527
              +++++ T  +++  L
Sbjct: 65  LCQFMVSIRTARDLWNYL 82


>BT011524-1|AAS15660.1|   89|Drosophila melanogaster RH42419p
           protein.
          Length = 89

 Score = 36.3 bits (80), Expect = 0.037
 Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
 Frame = +3

Query: 315 IKIKPFTNKDNYKAWRKLIKLLLDTKGI-----KIDDKNEEKL--ENKGKFIIFSYIEEK 473
           ++I+     DNYKAW   ++  L+++ +        + NEE L  + + KF+I    E K
Sbjct: 5   LQIEKLKGLDNYKAWSMTVRAYLESEELWTVVENGPENNEESLLKDKRAKFLILCLFETK 64

Query: 474 YLHYVINLETIIEIFEKL 527
              +++++ T  +++  L
Sbjct: 65  LCQFMVSIRTARDLWNYL 82


>AF541947-1|AAN34649.1|  404|Drosophila melanogaster gag protein
           protein.
          Length = 404

 Score = 29.9 bits (64), Expect = 3.2
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 161 NPFKCNHPTGYGPRTNLKGNIYYTLLFKRRQYNRGNQTVYI 283
           NPF  NHP   G  TN   N  Y  + +++ YN GN   ++
Sbjct: 269 NPFHRNHPYAKGQPTNSDYNNRY--IPRQQNYNNGNNARHV 307


>AY089674-1|AAL90412.1|  317|Drosophila melanogaster RH46018p
           protein.
          Length = 317

 Score = 28.3 bits (60), Expect = 9.8
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +3

Query: 309 DSIKIKPFTNKDNYKAWRKLIKLLLDTKGIKIDDKNEEKL 428
           D +++      D YKA  KL+KL L  +GI + + N E+L
Sbjct: 133 DVLQLSDVDYLDTYKAMEKLVKLGL-VRGIGVSNFNSEQL 171


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,650,358
Number of Sequences: 53049
Number of extensions: 522245
Number of successful extensions: 1139
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1139
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2827453950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)