Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte16o08
(356 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe... 27 0.65
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy... 25 4.6
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 25 4.6
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ... 25 4.6
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 4.6
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz... 25 4.6
SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccha... 24 6.1
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar... 24 6.1
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po... 24 8.0
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce... 24 8.0
SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosacch... 24 8.0
>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 310
Score = 27.5 bits (58), Expect = 0.65
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Frame = -2
Query: 334 GGRAHSPPDVKWLLEPIDIYN---VNAPPTLRYKL-*GLSIVTTAAPPFKPKRITASRQK 167
GG H P V WLL P DIY+ VN + +L G+S+V P +T R
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYSGRKVNVQIETQSELTMGMSVVDWWQVGLLPANVTFLRTV 293
Query: 166 QAGRWY 149
+Y
Sbjct: 294 DDDEFY 299
>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 375
Score = 24.6 bits (51), Expect = 4.6
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = -3
Query: 210 PHPSNRNALLLHGRNRQGGGTYP 142
PHP N +LL G N Q + P
Sbjct: 97 PHPENSKIVLLMGSNAQNDPSSP 119
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 24.6 bits (51), Expect = 4.6
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -3
Query: 138 GLRTGPTTSNYANYNFAGFTFITRCYSFT 52
G R P+T ++ FT +T CYS T
Sbjct: 529 GTRISPSTLGDTSFPNGIFTLLTHCYSPT 557
>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 879
Score = 24.6 bits (51), Expect = 4.6
Identities = 8/30 (26%), Positives = 22/30 (73%)
Frame = -1
Query: 134 SEQVLPPVITQIIILRVSLLLHDVIPSPWK 45
++Q+L + +++R+ L L+++IP+P++
Sbjct: 151 TKQILQTLHALNMLIRIRLSLYEIIPTPFQ 180
>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 308
Score = 24.6 bits (51), Expect = 4.6
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 325 AHSPPDVKWLLEPIDIYNVNAPPTLR 248
A PP +K P+DI N++A L+
Sbjct: 224 ASQPPSIKTDASPVDIKNMDAAEKLK 249
>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 603
Score = 24.6 bits (51), Expect = 4.6
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = -1
Query: 221 YNGCPTLQTETHYCFTAETGRA 156
Y CP L + +CF+A +A
Sbjct: 517 YPACPLLTSRVRFCFSASHNKA 538
>SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 24.2 bits (50), Expect = 6.1
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = -2
Query: 274 NVNAPPTLRYKL*GLSIVTTAAPPFKPKRITASRQKQAGRWYLPARTQNRSY 119
N N P TL + L G A+ + P + +R + GR+ P N +Y
Sbjct: 104 NYNLPETLCFLLAGFVGDLFASVVYVPSEVLKTRLQLQGRYNNPHFQSNYNY 155
>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
I|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 24.2 bits (50), Expect = 6.1
Identities = 7/17 (41%), Positives = 13/17 (76%)
Frame = +1
Query: 76 KSETRKIIICVITGGRT 126
K +K+++C+I+ GRT
Sbjct: 229 KDAWKKVVVCIISDGRT 245
>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 743
Score = 23.8 bits (49), Expect = 8.0
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1
Query: 110 ITQIIILRVSLLLHDVIPSPWKSIVNI 30
+T I+L + +LHD S W+S+V I
Sbjct: 220 LTGTILLVIMFVLHDGSLSIWQSLVMI 246
>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 23.8 bits (49), Expect = 8.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 150 YHRPACFCREAVMRFGLKGGAAVVTI 227
+ +P+ F E V+ L GG AVV +
Sbjct: 87 FKKPSSFTGEDVVELQLHGGTAVVDV 112
>SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 23.8 bits (49), Expect = 8.0
Identities = 6/23 (26%), Positives = 17/23 (73%)
Frame = -1
Query: 101 IIILRVSLLLHDVIPSPWKSIVN 33
+++L ++++L ++ SPW + +N
Sbjct: 95 LVMLVITVILENITDSPWNAYLN 117
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,607,881
Number of Sequences: 5004
Number of extensions: 31182
Number of successful extensions: 63
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -