Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16o08
         (356 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1461 - 27299891-27301870                                         29   1.4  
01_06_1749 - 39636951-39638102                                         28   1.9  
01_01_0254 - 2074095-2074100,2074389-2074462,2074572-2074633,207...    28   2.5  
11_01_0305 + 2299681-2299860,2299940-2300260,2300346-2300600           27   4.3  
11_06_0739 + 26814463-26814809,26814891-26815217,26815458-26817636     27   5.7  
04_01_0128 + 1398190-1398480,1399245-1399505                           27   5.7  
02_04_0236 - 21170753-21170794,21171089-21172220,21172332-211726...    27   5.7  
04_04_1670 - 35227581-35228168,35228250-35228435,35228529-35228801     26   7.6  
04_01_0501 - 6558120-6559312,6559441-6559518,6559818-6559877,656...    26   7.6  
03_06_0720 + 35739383-35739391,35739802-35740275,35740695-357411...    26   7.6  

>08_02_1461 - 27299891-27301870
          Length = 659

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -3

Query: 207 HPSNRNALLLHGRNRQGGGTYPRGLRTGPTTS 112
           H ++    LL GR R GGG + RGL   P  S
Sbjct: 282 HAADLRKKLLRGRRRGGGGGHRRGLFVFPLVS 313


>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 229 SIVTTAAPPFKPKRITASRQKQAGR 155
           S+ + AAPPF P RIT+      GR
Sbjct: 165 SVASAAAPPFDPSRITSYAAHPNGR 189


>01_01_0254 -
           2074095-2074100,2074389-2074462,2074572-2074633,
           2074790-2075123,2075271-2075487,2075575-2075685,
           2076304-2076840
          Length = 446

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +3

Query: 189 RFGLKGGAAVVTILRPYNLYLKVGGAFTL*MSMGSSNHLTSG 314
           + G+ G   V+   R   + L +GG     ++MG + HL +G
Sbjct: 354 KLGILGALEVIDAARKARIALMIGGMVETRIAMGFAGHLAAG 395


>11_01_0305 + 2299681-2299860,2299940-2300260,2300346-2300600
          Length = 251

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 235 LTTYISRWVAHLRCRC 282
           LTT +  W AH RCRC
Sbjct: 121 LTTALPPWEAHPRCRC 136


>11_06_0739 + 26814463-26814809,26814891-26815217,26815458-26817636
          Length = 950

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
 Frame = +2

Query: 182 SNAFRFEGWGSRCNYTETLQLI----SQGGWRIYVVDVYGLQ*PLNIRWAVSSSTHLSN 346
           S+AF   G GSR   T T+Q +    S G   +Y ++  G +    + ++V  S  L N
Sbjct: 242 SSAFENNGTGSRILLTTTIQSVTNRCSHGNGYVYQMNTLGKEDSEELAFSVLRSPELEN 300


>04_01_0128 + 1398190-1398480,1399245-1399505
          Length = 183

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -3

Query: 201 SNRNALLLHGRNRQGGGTYPRGLRTGPTTSN 109
           +  NA   HGR        PR + T PTT+N
Sbjct: 57  NGNNAEDHHGRQAAAAAVVPRAVSTRPTTTN 87


>02_04_0236 -
           21170753-21170794,21171089-21172220,21172332-21172601,
           21173043-21173305,21173406-21173492,21174149-21174326,
           21174784-21174984,21175769-21176025
          Length = 809

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 313 PDVKWLLEPIDIYNVNAPPTLRYKL 239
           P+VK  L  +D Y++ AP TL  KL
Sbjct: 189 PEVKAYLNGVDAYSILAPSTLFVKL 213


>04_04_1670 - 35227581-35228168,35228250-35228435,35228529-35228801
          Length = 348

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 188 HYCFTAETGRAVVPTRADSEQVLPPVIT 105
           H CF      +++ T A+SEQ LPP +T
Sbjct: 86  HDCFPQGCDASLLLTGANSEQQLPPNLT 113


>04_01_0501 -
           6558120-6559312,6559441-6559518,6559818-6559877,
           6560000-6560083,6560407-6560566
          Length = 524

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 10/40 (25%), Positives = 23/40 (57%)
 Frame = +1

Query: 4   FSNEIRTHQMFTIDFHGEGITSCNKSETRKIIICVITGGR 123
           F+ E+ ++ +  +  HG G+T+C    T  +++ ++  GR
Sbjct: 400 FAREVNSYDVM-VGVHGAGLTNCVFLPTGAVLLQIVPYGR 438


>03_06_0720 +
           35739383-35739391,35739802-35740275,35740695-35741122,
           35741273-35741351
          Length = 329

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 177 HGRNRQGGGTYPRGLRTGPTTSNY 106
           HG+ R+GG   PRG  T    S Y
Sbjct: 18  HGQQRRGGSPPPRGRTTSVYRSGY 41


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,391,661
Number of Sequences: 37544
Number of extensions: 251039
Number of successful extensions: 592
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 542368620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)