Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16o08
         (356 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.6  
SB_19291| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.4  
SB_28540| Best HMM Match : Stig1 (HMM E-Value=2.6)                     27   5.9  
SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12)               27   5.9  
SB_23051| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  

>SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2317

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 55   EGITSCNKSETRKIIICVITGGRTCSESARVGTTALPVS 171
            +G T+  +S  R     +IT G T +  +  GTTA+P+S
Sbjct: 1651 DGTTAVPRSMDRTTAAPMITDGTTAAPMSTDGTTAVPMS 1689


>SB_19291| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1258

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -3

Query: 201 SNRNALLLHGRNRQGGGTYPRGLRTG 124
           S+ N+  L  +NR+G GTYP  LR+G
Sbjct: 724 SSDNSFSLEDKNREGPGTYP--LRSG 747


>SB_28540| Best HMM Match : Stig1 (HMM E-Value=2.6)
          Length = 465

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 8/25 (32%), Positives = 18/25 (72%)
 Frame = +2

Query: 206 WGSRCNYTETLQLISQGGWRIYVVD 280
           WGS C +++ +++ + GG+ +Y +D
Sbjct: 127 WGSICQWSQMIRVKNCGGFYVYELD 151


>SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12)
          Length = 872

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 222 LQRLPHPSNRNALLLHGRNRQ 160
           +QR P P+ RN++ LHG   Q
Sbjct: 30  VQRRPEPTPRNSIFLHGLRAQ 50


>SB_23051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2141

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 16/61 (26%), Positives = 23/61 (37%)
 Frame = -1

Query: 332 WTSSQPT*C*VVTGAHRHLQRKCATHLEI*VVRSQYSYNGCPTLQTETHYCFTAETGRAV 153
           WT    T   +VT  H+HL     TH  + + +S ++   C T       C     G   
Sbjct: 467 WTHKDLT---IVTWTHKHLTIVTWTHKHLTIKQSDFAIKQCNTAIRSLEQCLEILRGEVE 523

Query: 152 V 150
           V
Sbjct: 524 V 524


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,462,097
Number of Sequences: 59808
Number of extensions: 261815
Number of successful extensions: 633
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 560496285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)